The role of DEAD-box ATPases in gene expression and the regulation of RNA–protein condensates

K Weis, M Hondele - Annual review of biochemistry, 2022 - annualreviews.org
DEAD-box ATPases constitute a very large protein family present in all cells, often in great
abundance. From bacteria to humans, they play critical roles in many aspects of RNA …

The interchromatin compartment participates in the structural and functional organization of the cell nucleus

T Cremer, M Cremer, B Hübner, A Silahtaroglu… - …, 2020 - Wiley Online Library
This article focuses on the role of the interchromatin compartment (IC) in shaping nuclear
landscapes. The IC is connected with nuclear pore complexes (NPCs) and harbors splicing …

Polyploidy, the nucleotype, and novelty: the impact of genome doubling on the biology of the cell

JJ Doyle, JE Coate - International Journal of Plant Sciences, 2019 - journals.uchicago.edu
Polyploidy is a key mechanism of genome evolution and speciation, particularly in plants.
Many aspects of polyploidy have been elucidated with the tools that have become available …

Emerging evidence of translational control by AU-rich element-binding proteins

H Otsuka, A Fukao, Y Funakami, KE Duncan… - Frontiers in …, 2019 - frontiersin.org
RNA-binding proteins (RBPs) are key regulators of posttranscriptional gene expression and
control many important biological processes including cell proliferation, development, and …

TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets

B Decaesteker, G Denecker, C Van Neste… - Nature …, 2018 - nature.com
Chromosome 17q gains are almost invariably present in high-risk neuroblastoma cases.
Here, we perform an integrative epigenomics search for dosage-sensitive transcription …

Ran GTPase and its importance in cellular signaling and malignant phenotype

M El-Tanani, H Nsairat, V Mishra, Y Mishra… - International journal of …, 2023 - mdpi.com
Ran is a member of the Ras superfamily of proteins, which primarily regulates
nucleocytoplasmic trafficking and mediates mitosis by regulating spindle formation and …

ALYREF mainly binds to the 5′ and the 3′ regions of the mRNA in vivo

M Shi, H Zhang, X Wu, Z He, L Wang, S Yin… - Nucleic acids …, 2017 - academic.oup.com
The TREX complex (TREX) plays key roles in nuclear export of mRNAs. However, little is
known about its transcriptome-wide binding targets. We used individual cross-linking and …

Crosstalk between nucleocytoplasmic trafficking and the innate immune response to viral infection

Q Shen, YE Wang, AF Palazzo - Journal of Biological Chemistry, 2021 - ASBMB
The nuclear pore complex is the sole gateway connecting the nucleoplasm and cytoplasm.
In humans, the nuclear pore complex is one of the largest multiprotein assemblies in the cell …

RNA export through the nuclear pore complex is directional

A Ashkenazy-Titelman, MK Atrash, A Boocholez… - Nature …, 2022 - nature.com
The changes occurring in mRNA organization during nucleo-cytoplasmic transport and
export, are not well understood. Moreover, directionality of mRNA passage through the …

The multifaceted role of PARP1 in RNA biogenesis

R Eleazer… - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Abstract Poly (ADP‐ribose) polymerases (PARPs) are abundant nuclear proteins that
synthesize ADP ribose polymers (pADPr) and catalyze the addition of (p) ADPr to target …