Colletotrichum: current status and future directions

PF Cannon, U Damm, PR Johnston… - Studies in …, 2012 - ingentaconnect.com
A review is provided of the current state of understanding of Colletotrichum systematics,
focusing on species-level data and the major clades. The taxonomic placement of the genus …

Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide

BD Lindahl, RH Nilsson, L Tedersoo… - New …, 2013 - Wiley Online Library
Novel high‐throughput sequencing methods outperform earlier approaches in terms of
resolution and magnitude. They enable identification and relative quantification of …

[HTML][HTML] Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

R Lücking, MC Aime, B Robbertse, AN Miller… - IMA fungus, 2020 - Springer
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

CL Schoch, KA Seifert, S Huhndorf… - Proceedings of the …, 2012 - National Acad Sciences
Six DNA regions were evaluated as potential DNA barcodes for Fungi, the second largest
kingdom of eukaryotic life, by a multinational, multilaboratory consortium. The region of the …

[HTML][HTML] DNA sequence-based identification of Fusarium: Current status and future directions

K O'Donnell, TJ Ward, VARG Robert, PW Crous… - Phytoparasitica, 2015 - Springer
Fusarium ranks as one of the world's most economically destructive and species-rich groups
of mycotoxigenic plant pathogens (Aoki et al. 2014). These ubiquitous molds produce a …

Forgotten fungi—the gut mycobiome in human health and disease

CE Huseyin, PW O'Toole, PD Cotter… - FEMS Microbiology …, 2017 - academic.oup.com
The human body is home to a complex and diverse microbial ecosystem that plays a central
role in host health. This includes a diversity of fungal species that is collectively referred to …

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

CL Schoch, B Robbertse, V Robert, D Vu… - Database, 2014 - academic.oup.com
DNA phylogenetic comparisons have shown that morphology-based species recognition
often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data …

ITS 1 versus ITS 2 as DNA metabarcodes for fungi

R Blaalid, S Kumar, RH Nilsson… - Molecular ecology …, 2013 - Wiley Online Library
Abstract The nuclear ribosomal Internal Transcribed Spacer ITS region is widely used as a
DNA metabarcoding marker to characterize the diversity and composition of fungal …

The Colletotrichum boninense species complex

U Damm, PF Cannon, JHC Woudenberg… - Studies in …, 2012 - ingentaconnect.com
Although only recently described, Colletotrichum boninense is well established in literature
as an anthracnose pathogen or endophyte of a diverse range of host plants worldwide. It is …

Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape

NB Zimmerman, PM Vitousek - Proceedings of the National …, 2012 - National Acad Sciences
We surveyed endophytic fungal communities in leaves of a single tree species
(Metrosideros polymorpha) across wide environmental gradients (500–5,500 mm of rain/y; …