Antimicrobial peptide mechanism studied by scattering-guided molecular dynamics simulation

R Allsopp, A Pavlova, T Cline… - The Journal of …, 2022 - ACS Publications
In an effort to combat rising antimicrobial resistance, our labs have rationally designed
cationic, helical, amphipathic antimicrobial peptides (AMPs) as alternatives to traditional …

Alzheimer's protective A2T mutation changes the conformational landscape of the Aβ1–42 monomer differently than does the A2V mutation

P Das, B Murray, G Belfort - Biophysical Journal, 2015 - cell.com
The aggregation of amyloid-β (Aβ) peptides plays a crucial role in the etiology of Alzheimer's
disease (AD). Recently, it has been reported that an A2T mutation in Aβ can protect against …

Exploring the Barriers in the Aggregation of a Hexadecameric Human Prion Peptide through the Markov State Model

BK Das, O Singh, D Chakraborty - ACS Chemical Neuroscience, 2023 - ACS Publications
The prefibrillar aggregation kinetics of prion peptides are still an enigma. In this perspective,
we employ atomistic molecular dynamics (MD) simulations of the shortest human prion …

Interaction of amyloid inhibitor proteins with amyloid beta peptides: insight from molecular dynamics simulations

P Das, S Kang, S Temple, G Belfort - PloS one, 2014 - journals.plos.org
Knowledge of the detailed mechanism by which proteins such as human αB-crystallin and
human lysozyme inhibit amyloid beta (Aβ) peptide aggregation is crucial for designing …

Membrane-mediated neuroprotection by curcumin from amyloid-β-peptide-induced toxicity

A Thapa, BC Vernon, K De la Pena, G Soliz… - Langmuir, 2013 - ACS Publications
Amyloid-β peptide (Aβ)–membrane interactions have been implicated in the formation of
toxic oligomers that permeabilize membranes, allowing an influx of calcium ions and …

Molecular understanding of Aβ-hIAPP cross-seeding assemblies on lipid membranes

M Zhang, R Hu, B Ren, H Chen, B Jiang… - ACS chemical …, 2017 - ACS Publications
Amyloid-β (Aβ) and human islet polypeptide (hIAPP) are the causative agents responsible
for Alzheimer's disease (AD) and type II diabetes (T2D), respectively. While numerous …

Investigation of the interaction of amyloid β peptide (11–42) oligomers with a 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) membrane using molecular …

N Xiang, Y Lyu, X Zhu, G Narsimhan - Physical Chemistry Chemical …, 2018 - pubs.rsc.org
Some amyloid related proteins/peptides are involved in aggregation and pore formation in
phospholipid membranes (cell membranes), which result in a variety of neurological …

[HTML][HTML] Atomistic-level study of the interactions between hIAPP protofibrils and membranes: Influence of pH and lipid composition

Z Qian, Y Zou, Q Zhang, P Chen, B Ma, G Wei… - … et Biophysica Acta (BBA …, 2018 - Elsevier
The pathology of type 2 diabetes mellitus is associated with the aggregation of human islet
amyloid polypeptide (hIAPP) and aggregation-mediated membrane disruption. The …

Characterisation of the structure and oligomerisation of islet amyloid polypeptides (IAPP): a review of molecular dynamics simulation studies

SJ Moore, K Sonar, P Bharadwaj, E Deplazes… - Molecules, 2018 - mdpi.com
Human islet amyloid polypeptide (hIAPP) is a naturally occurring, intrinsically disordered
protein whose abnormal aggregation into amyloid fibrils is a pathological feature in type 2 …

Alzheimer's disease: which type of amyloid-preventing drug agents to employ?

H Jang, L Connelly, FT Arce… - Physical Chemistry …, 2013 - pubs.rsc.org
The current paradigm in the amyloid hypothesis brands small β-amyloid (Aβ) oligomers as
the toxic species in Alzheimer's disease (AD). These oligomers are fibril-like; contain β-sheet …