TET (Ten-eleven translocation) family proteins: structure, biological functions and applications

X Zhang, Y Zhang, C Wang, X Wang - Signal Transduction and …, 2023 - nature.com
Ten-eleven translocation (TET) family proteins (TETs), specifically, TET1, TET2 and TET3,
can modify DNA by oxidizing 5-methylcytosine (5mC) iteratively to yield 5 …

[HTML][HTML] Application of immunohistochemistry in diagnosis and management of malignant mesothelioma

DB Chapel, JJ Schulte, AN Husain… - Translational lung cancer …, 2020 - ncbi.nlm.nih.gov
Immunohistochemistry plays an indispensable role in accurate diagnosis of malignant
mesothelioma, particularly in morphologically challenging cases and in biopsy and cytology …

Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution

Y Liu, P Siejka-Zielińska, G Velikova, Y Bi, F Yuan… - Nature …, 2019 - nature.com
Bisulfite sequencing has been the gold standard for mapping DNA modifications including 5-
methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) for decades,,–. However, this …

5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages

CX Song, S Yin, L Ma, A Wheeler, Y Chen, Y Zhang… - Cell research, 2017 - nature.com
Hydroxymethylcytosine (5hmC) is an important mammalian DNA epigenetic modification
that has been linked to gene regulation and cancer pathogenesis. Here we explored the …

Fumarate and succinate regulate expression of hypoxia-inducible genes via TET enzymes

T Laukka, CJ Mariani, T Ihantola, JZ Cao… - Journal of Biological …, 2016 - ASBMB
The TET enzymes are members of the 2-oxoglutarate-dependent dioxygenase family and
comprise three isoenzymes in humans: TETs 1–3. These TETs convert 5-methylcytosine to 5 …

Multi-omics approaches in colorectal cancer screening and diagnosis, recent updates and future perspectives

I Ullah, L Yang, FT Yin, Y Sun, XH Li, J Li, XJ Wang - Cancers, 2022 - mdpi.com
Simple Summary Colorectal cancer (CRC) is one of the most prevalent cancers worldwide.
Due to the absence of specific early symptoms, most of CRC patients are often diagnosed at …

Enhancing clinical potential of liquid biopsy through a multi-omic approach: A systematic review

G Di Sario, V Rossella, ES Famulari, A Maurizio… - Frontiers in …, 2023 - frontiersin.org
In the last years, liquid biopsy gained increasing clinical relevance for detecting and
monitoring several cancer types, being minimally invasive, highly informative and replicable …

CircMEMO1 modulates the promoter methylation and expression of TCF21 to regulate hepatocellular carcinoma progression and sorafenib treatment sensitivity

ZR Dong, AW Ke, T Li, JB Cai, Y Yang, W Zhou… - Molecular cancer, 2021 - Springer
Background Cirrhosis is a recognized risk factor for developing hepatocellular carcinoma
(HCC). Few studies have reported the expression profile of circRNAs in HCC samples …

Guidelines for pre-analytical conditions for assessing the methylation of circulating cell-free DNA

MA Kerachian, M Azghandi, S Mozaffari-Jovin… - Clinical …, 2021 - Springer
Methylation analysis of circulating cell-free DNA (cirDNA), as a liquid biopsy, has a
significant potential to advance the detection, prognosis, and treatment of cancer, as well as …

[HTML][HTML] 5-Hydroxymethylcytosine localizes to enhancer elements and is associated with survival in glioblastoma patients

KC Johnson, EA Houseman, JE King… - Nature …, 2016 - nature.com
Glioblastomas exhibit widespread molecular alterations including a highly distorted
epigenome. Here, we resolve genome-wide 5-methylcytosine and 5-hydroxymethylcytosine …