[HTML][HTML] Protein network analysis and functional enrichment via computational biotechnology unravel molecular and pathogenic mechanisms of kidney stone disease

P Peerapen, V Thongboonkerd - biomedical journal, 2023 - Elsevier
Mass spectrometry-based proteomics has been extensively applied to current biomedical
research. From such large-scale identification of proteins, several computational tools have …

Prioritization of genes for translation: A computational approach

SC da Silva Rosa, A Barzegar Behrooz… - Expert Review of …, 2024 - Taylor & Francis
Introduction Gene identification for genetic diseases is critical for the development of new
diagnostic approaches and personalized treatment options. Prioritization of gene translation …

Protein–Protein Interaction Network Exploration Using Cytoscape

A Majeed, S Mukhtar - Protein-Protein Interactions: Methods and Protocols, 2023 - Springer
As the protein–protein interaction (PPI) data increase exponentially, the development and
usage of computational methods to analyze these datasets have become a new research …

Medication-Related Osteonecrosis of the Jaw: A Systematic Review and a Bioinformatic Analysis

G Laputková, I Talian, V Schwartzová - International Journal of Molecular …, 2023 - mdpi.com
The objective was to evaluate the current evidence regarding the etiology of medication-
related osteonecrosis of the jaw (MRONJ). This study systematically reviewed the literature …

Harnessing the predicted maize pan-interactome for putative gene function prediction and prioritization of candidate genes for important traits

E Poretsky, HB Cagirici, CM Andorf… - G3: Genes, Genomes …, 2024 - academic.oup.com
The recent assembly and annotation of the 26 maize nested association mapping
population founder inbreds have enabled large-scale pan-genomic comparative studies …

DKK3 expression is correlated with poorer prognosis in head and neck squamous cell carcinoma: A bioinformatics study based on the TCGA database

N Katase, S Nishimatsu, A Yamauchi, S Okano… - Journal of Oral …, 2023 - Elsevier
Objective We previously reported that dickkopf WNT signaling pathway inhibitor 3 (DKK3)
expression is correlated with poorer prognosis in head and neck squamous cell carcinoma …

Two-Dimensional Blue Native/SDS Polyacrylamide Gel Electrophoresis for Analysis of Brazilian Bothrops Snake Venoms

N Ferreira de Oliveira, ATA Sachetto, ML Santoro - Toxins, 2022 - mdpi.com
Viperidae snakes are the most important agents of snakebites in Brazil. The protein
composition of snake venoms has been frequently analyzed by means of electrophoretic …

NADP+ or CO2 reduction by frhAGB-encoded hydrogenase through interaction with formate dehydrogenase 3 in the hyperthermophilic archaeon Thermococcus …

J Yang, HC Jung, HM Oh, BG Choi… - Applied and …, 2023 - Am Soc Microbiol
It has been reported that the frhAGB-encoded hydrogenase from Thermococcus onnurineus
NA1 is homologous to the F420-reducing hydrogenase from methanogens and can reduce …

Comparative proteomics reveals the mechanism of cyclosporine production and mycelial growth in Tolypocladium inflatum affected by different carbon sources

J Wang, M Liu, C Mao, S Li, J Zhou, Y Fan… - Frontiers in …, 2023 - frontiersin.org
Cyclosporine A (CsA) is a secondary cyclopeptide metabolite produced by Tolypocladium
inflatum that is widely used clinically as an immunosuppressant. CsA production and …

[HTML][HTML] Deep-HPI-pred: An R-Shiny applet for network-based classification and prediction of Host-Pathogen protein-protein interactions

MT ul Qamar, F Noor, YX Guo, XT Zhu… - Computational and …, 2024 - Elsevier
Host-pathogen interactions (HPIs) are vital in numerous biological activities and are
intrinsically linked to the onset and progression of infectious diseases. HPIs are pivotal in the …