Machine Learning for Sequence and Structure-Based Protein–Ligand Interaction Prediction
Y Zhang, S Li, K Meng, S Sun - Journal of Chemical Information …, 2024 - ACS Publications
Developing new drugs is too expensive and time-consuming. Accurately predicting the
interaction between drugs and targets will likely change how the drug is discovered …
interaction between drugs and targets will likely change how the drug is discovered …
Deciphering the lexicon of protein targets: a review on multifaceted drug discovery in the era of artificial intelligence
Understanding protein sequence and structure is essential for understanding protein–
protein interactions (PPIs), which are essential for many biological processes and diseases …
protein interactions (PPIs), which are essential for many biological processes and diseases …
Hydrascreen: A generalizable structure-based deep learning approach to drug discovery
A Prat, H Abdel Aty, O Bastas… - Journal of Chemical …, 2023 - ACS Publications
We propose HydraScreen, a deep-learning framework for safe and robust accelerated drug
discovery. HydraScreen utilizes a state-of-the-art 3D convolutional neural network designed …
discovery. HydraScreen utilizes a state-of-the-art 3D convolutional neural network designed …
[HTML][HTML] The Impact of Data on Structure-Based Binding Affinity Predictions Using Deep Neural Networks
PY Libouban, S Aci-Sèche, JC Gómez-Tamayo… - International Journal of …, 2023 - mdpi.com
Artificial intelligence (AI) has gained significant traction in the field of drug discovery, with
deep learning (DL) algorithms playing a crucial role in predicting protein–ligand binding …
deep learning (DL) algorithms playing a crucial role in predicting protein–ligand binding …
Directional ΔG Neural Network (DrΔG-Net): A Modular Neural Network Approach to Binding Free Energy Prediction
The protein–ligand binding free energy is a central quantity in structure-based
computational drug discovery efforts. Although popular alchemical methods provide sound …
computational drug discovery efforts. Although popular alchemical methods provide sound …
Multi-task bioassay pre-training for protein-ligand binding affinity prediction
Protein–ligand binding affinity (PLBA) prediction is the fundamental task in drug discovery.
Recently, various deep learning-based models predict binding affinity by incorporating the …
Recently, various deep learning-based models predict binding affinity by incorporating the …
GraphLambda: fusion graph neural networks for binding affinity prediction
G Mqawass, P Popov - Journal of Chemical Information and …, 2024 - ACS Publications
Predicting the binding affinity of protein–ligand complexes is crucial for computer-aided drug
discovery (CADD) and the identification of potential drug candidates. The deep learning …
discovery (CADD) and the identification of potential drug candidates. The deep learning …
Toward generalizable structure‐based deep learning models for protein–ligand interaction prediction: Challenges and strategies
Accurate and rapid prediction of protein–ligand interactions (PLIs) is the fundamental
challenge of drug discovery. Deep learning methods have been harnessed for this purpose …
challenge of drug discovery. Deep learning methods have been harnessed for this purpose …
Modern machine‐learning for binding affinity estimation of protein–ligand complexes: Progress, opportunities, and challenges
T Harren, T Gutermuth, C Grebner… - Wiley …, 2024 - Wiley Online Library
Abstract Structure‐based drug design is a widely applied approach in the discovery of new
lead compounds for known therapeutic targets. In most structure‐based drug design …
lead compounds for known therapeutic targets. In most structure‐based drug design …
[HTML][HTML] From GPUs to AI and quantum: three waves of acceleration in bioinformatics
B Schmidt, A Hildebrandt - Drug Discovery Today, 2024 - Elsevier
The enormous growth in the amount of data generated by the life sciences is continuously
shifting the field from model-driven science towards data-driven science. The need for …
shifting the field from model-driven science towards data-driven science. The need for …