[HTML][HTML] Translating cancer genomics into precision medicine with artificial intelligence: applications, challenges and future perspectives
J Xu, P Yang, S Xue, B Sharma, M Sanchez-Martin… - Human genetics, 2019 - Springer
In the field of cancer genomics, the broad availability of genetic information offered by next-
generation sequencing technologies and rapid growth in biomedical publication has led to …
generation sequencing technologies and rapid growth in biomedical publication has led to …
Genes, mutations, and human inherited disease at the dawn of the age of personalized genomics
The number of reported germline mutations in human nuclear genes, either underlying or
associated with inherited disease, has now exceeded 100,000 in more than 3,700 different …
associated with inherited disease, has now exceeded 100,000 in more than 3,700 different …
PMut: a web-based tool for the annotation of pathological variants on proteins, 2017 update
We present here a full update of the PMut predictor, active since 2005 and with a large
acceptance in the field of predicting Mendelian pathological mutations. PMut internal engine …
acceptance in the field of predicting Mendelian pathological mutations. PMut internal engine …
Functional annotations improve the predictive score of human disease‐related mutations in proteins
R Calabrese, E Capriotti, P Fariselli… - Human …, 2009 - Wiley Online Library
Single nucleotide polymorphisms (SNPs) are the simplest and most frequent form of human
DNA variation, also valuable as genetic markers of disease susceptibility. The most …
DNA variation, also valuable as genetic markers of disease susceptibility. The most …
[HTML][HTML] WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation
Background SNPs&GO is a method for the prediction of deleterious Single Amino acid
Polymorphisms (SAPs) using protein functional annotation. In this work, we present the web …
Polymorphisms (SAPs) using protein functional annotation. In this work, we present the web …
[HTML][HTML] The role of balanced training and testing data sets for binary classifiers in bioinformatics
Q Wei, RL Dunbrack Jr - PloS one, 2013 - journals.plos.org
Training and testing of conventional machine learning models on binary classification
problems depend on the proportions of the two outcomes in the relevant data sets. This may …
problems depend on the proportions of the two outcomes in the relevant data sets. This may …
[HTML][HTML] PON-P2: prediction method for fast and reliable identification of harmful variants
More reliable and faster prediction methods are needed to interpret enormous amounts of
data generated by sequencing and genome projects. We have developed a new …
data generated by sequencing and genome projects. We have developed a new …
Bioinformatics challenges for personalized medicine
GH Fernald, E Capriotti, R Daneshjou… - …, 2011 - academic.oup.com
Motivation: Widespread availability of low-cost, full genome sequencing will introduce new
challenges for bioinformatics. Results: This review outlines recent developments in …
challenges for bioinformatics. Results: This review outlines recent developments in …
[HTML][HTML] Collective judgment predicts disease-associated single nucleotide variants
Background In recent years the number of human genetic variants deposited into the
publicly available databases has been increasing exponentially. The latest version of …
publicly available databases has been increasing exponentially. The latest version of …
Classification of rare missense substitutions, using risk surfaces, with genetic‐and molecular‐epidemiology applications
SV Tavtigian, GB Byrnes, DE Goldgar… - Human …, 2008 - Wiley Online Library
Many individually rare missense substitutions are encountered during deep resequencing of
candidate susceptibility genes and clinical mutation screening of known susceptibility …
candidate susceptibility genes and clinical mutation screening of known susceptibility …