Self‐regulation in a stochastic model of chemical self‐replication

A Borri, M d'Angelo, P Palumbo - International Journal of …, 2023 - Wiley Online Library
In this article, we provide an analysis of noise propagation in a stochastic minimal model of
chemical self‐replication, where a given species can duplicate itself normally. A feedback …

[图书][B] Stochastic foundations for single-cell RNA sequencing

G Gorin - 2023 - search.proquest.com
Single-cell RNA sequencing, which quantifies cell transcriptomes, has seen widespread
adoption, accompanied by proliferation of analysis methods. However, there has been …

[PDF][PDF] Coordination of Gene Expression Noise with Cell Size: Extrinsic Noise versus Agent-Based Models of Growing Cell Populations

P Thomas, V Shahrezaei - scholar.archive.org
The chemical master equation and the stochastic simulation algorithm are widely used to
model the reaction kinetics inside living cells. It is thereby assumed that cell growth and …

Periodicity in the embryo: emergence of order in space, diffusion of order in time

B Alicea, J Parent, U Singh - Biosystems, 2021 - Elsevier
Does embryonic development exhibit characteristic temporal features? This is apparent in
evolution, where evolutionary change has been shown to occur in bursts of activity. Using …

Framework estimation of stochastic gene activation using transcription average level

L Chen, G Lin, F Jiao - bioRxiv, 2021 - biorxiv.org
Gene activation is usually a non-Markovian process that has been modeled as various
frameworks that consist of multiple rate-limiting steps. Understanding the exact activation …

The Nonequilibrium Mechanism of Noise Enhancer synergizing with Activator in HIV Latency Reactivation

X Guo, T Tang, M Duan, L Zhang, H Ge - arXiv preprint arXiv:2001.05115, 2020 - arxiv.org
Noise-modulating chemicals can synergize with transcriptional activators in reactivating
latent HIV to eliminate latent HIV reservoirs. To understand the underlying biomolecular …

The Genetic and Mechanical Origins of Tumor Heterogeneity

CT Schunk - 2022 - search.proquest.com
Most of the deaths from cancer are due to metastasis from primary tumor sites to other sites
in the body. Heterogeneity in tumors is associated with increased metastasis and a …

Simulation of biochemical systems using constraint-based methods and complex networks

PEP Burke - 2021 - teses.usp.br
Computational models of biomolecular systems have been employed to advance
knowledge in many research areas. They have particular impact in modern areas such as …