Roles for synonymous codon usage in protein biogenesis
JL Chaney, PL Clark - Annual review of biophysics, 2015 - annualreviews.org
Owing to the degeneracy of the genetic code, a protein sequence can be encoded by many
different synonymous mRNA coding sequences. Synonymous codon usage was once …
different synonymous mRNA coding sequences. Synonymous codon usage was once …
[HTML][HTML] Bacterial genomic G+ C composition-eliciting environmental adaptation
S Mann, YPP Chen - Genomics, 2010 - Elsevier
Bacterial genomes reflect their adaptation strategies through nucleotide usage trends found
in their chromosome composition. Bacteria, unlike eukaryotes contain a wide range of …
in their chromosome composition. Bacteria, unlike eukaryotes contain a wide range of …
Sequence signatures and mRNA concentration can explain two‐thirds of protein abundance variation in a human cell line
Transcription, mRNA decay, translation and protein degradation are essential processes
during eukaryotic gene expression, but their relative global contributions to steady‐state …
during eukaryotic gene expression, but their relative global contributions to steady‐state …
CO2 to Terpenes: Autotrophic and Electroautotrophic α‐Humulene Production with Cupriavidus necator
T Krieg, A Sydow, S Faust, I Huth… - Angewandte Chemie …, 2018 - Wiley Online Library
We show that CO2 can be converted by an engineered “Knallgas” bacterium (Cupriavidus
necator) into the terpene α‐humulene. Heterologous expression of the mevalonate pathway …
necator) into the terpene α‐humulene. Heterologous expression of the mevalonate pathway …
The Effects of Codon Context on In Vivo Translation Speed
FFV Chevance, S Le Guyon, KT Hughes - PLoS genetics, 2014 - journals.plos.org
We developed a bacterial genetic system based on translation of the his operon leader
peptide gene to determine the relative speed at which the ribosome reads single or multiple …
peptide gene to determine the relative speed at which the ribosome reads single or multiple …
Widespread position-specific conservation of synonymous rare codons within coding sequences
JL Chaney, A Steele, R Carmichael… - PLoS computational …, 2017 - journals.plos.org
Synonymous rare codons are considered to be sub-optimal for gene expression because
they are translated more slowly than common codons. Yet surprisingly, many protein coding …
they are translated more slowly than common codons. Yet surprisingly, many protein coding …
The Complete Chloroplast Genome Sequences of the Medicinal Plant Forsythia suspensa (Oleaceae)
W Wang, H Yu, J Wang, W Lei, J Gao, X Qiu… - International Journal of …, 2017 - mdpi.com
Forsythia suspensa is an important medicinal plant and traditionally applied for the treatment
of inflammation, pyrexia, gonorrhea, diabetes, and so on. However, there is limited …
of inflammation, pyrexia, gonorrhea, diabetes, and so on. However, there is limited …
Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes
Background Codon usage bias has been widely reported to correlate with GC composition.
However, the quantitative relationship between codon usage bias and GC composition …
However, the quantitative relationship between codon usage bias and GC composition …
Mass spectrometry of modified RNAs: recent developments
C Wetzel, PA Limbach - Analyst, 2016 - pubs.rsc.org
A common feature of ribonucleic acids (RNAs) is that they can undergo a variety of chemical
modifications. As nearly all of these chemical modifications result in an increase in the mass …
modifications. As nearly all of these chemical modifications result in an increase in the mass …
The Yin and Yang of codon usage
AA Komar - Human molecular genetics, 2016 - academic.oup.com
The genetic code is degenerate. With the exception of two amino acids (Met and Trp), all
other amino acid residues are each encoded by multiple, so-called synonymous codons …
other amino acid residues are each encoded by multiple, so-called synonymous codons …