Roles for synonymous codon usage in protein biogenesis

JL Chaney, PL Clark - Annual review of biophysics, 2015 - annualreviews.org
Owing to the degeneracy of the genetic code, a protein sequence can be encoded by many
different synonymous mRNA coding sequences. Synonymous codon usage was once …

[HTML][HTML] Bacterial genomic G+ C composition-eliciting environmental adaptation

S Mann, YPP Chen - Genomics, 2010 - Elsevier
Bacterial genomes reflect their adaptation strategies through nucleotide usage trends found
in their chromosome composition. Bacteria, unlike eukaryotes contain a wide range of …

Sequence signatures and mRNA concentration can explain two‐thirds of protein abundance variation in a human cell line

C Vogel, R de Sousa Abreu, D Ko, SY Le… - Molecular systems …, 2010 - embopress.org
Transcription, mRNA decay, translation and protein degradation are essential processes
during eukaryotic gene expression, but their relative global contributions to steady‐state …

CO2 to Terpenes: Autotrophic and Electroautotrophic α‐Humulene Production with Cupriavidus necator

T Krieg, A Sydow, S Faust, I Huth… - Angewandte Chemie …, 2018 - Wiley Online Library
We show that CO2 can be converted by an engineered “Knallgas” bacterium (Cupriavidus
necator) into the terpene α‐humulene. Heterologous expression of the mevalonate pathway …

The Effects of Codon Context on In Vivo Translation Speed

FFV Chevance, S Le Guyon, KT Hughes - PLoS genetics, 2014 - journals.plos.org
We developed a bacterial genetic system based on translation of the his operon leader
peptide gene to determine the relative speed at which the ribosome reads single or multiple …

Widespread position-specific conservation of synonymous rare codons within coding sequences

JL Chaney, A Steele, R Carmichael… - PLoS computational …, 2017 - journals.plos.org
Synonymous rare codons are considered to be sub-optimal for gene expression because
they are translated more slowly than common codons. Yet surprisingly, many protein coding …

The Complete Chloroplast Genome Sequences of the Medicinal Plant Forsythia suspensa (Oleaceae)

W Wang, H Yu, J Wang, W Lei, J Gao, X Qiu… - International Journal of …, 2017 - mdpi.com
Forsythia suspensa is an important medicinal plant and traditionally applied for the treatment
of inflammation, pyrexia, gonorrhea, diabetes, and so on. However, there is limited …

Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes

XF Wan, D Xu, A Kleinhofs, J Zhou - BMC Evolutionary Biology, 2004 - Springer
Background Codon usage bias has been widely reported to correlate with GC composition.
However, the quantitative relationship between codon usage bias and GC composition …

Mass spectrometry of modified RNAs: recent developments

C Wetzel, PA Limbach - Analyst, 2016 - pubs.rsc.org
A common feature of ribonucleic acids (RNAs) is that they can undergo a variety of chemical
modifications. As nearly all of these chemical modifications result in an increase in the mass …

The Yin and Yang of codon usage

AA Komar - Human molecular genetics, 2016 - academic.oup.com
The genetic code is degenerate. With the exception of two amino acids (Met and Trp), all
other amino acid residues are each encoded by multiple, so-called synonymous codons …