Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …

A review of deep learning applications for genomic selection

OA Montesinos-López, A Montesinos-López… - BMC genomics, 2021 - Springer
Abstract Background Several conventional genomic Bayesian (or no Bayesian) prediction
methods have been proposed including the standard additive genetic effect model for which …

GAPIT version 3: boosting power and accuracy for genomic association and prediction

J Wang, Z Zhang - Genomics, Proteomics and Bioinformatics, 2021 - academic.oup.com
Genome-wide association study (GWAS) and genomic prediction/selection (GP/GS) are the
two essential enterprises in genomic research. Due to the great magnitude and complexity …

Heterosis and hybrid crop breeding: a multidisciplinary review

MR Labroo, AJ Studer, JE Rutkoski - Frontiers in Genetics, 2021 - frontiersin.org
Although hybrid crop varieties are among the most popular agricultural innovations, the
rationale for hybrid crop breeding is sometimes misunderstood. Hybrid breeding is slower …

[图书][B] Melhoramento de plantas

A Borém, GV Miranda, R Fritsche-Neto - 2021 - books.google.com
De seu início rudimentar, com a seleção de sementes pelos primeiros agricultores, às mais
novas técnicas com o uso da biotecnologia, como marcadores moleculares …

Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer

G Covarrubias-Pazaran - PloS one, 2016 - journals.plos.org
Most traits of agronomic importance are quantitative in nature, and genetic markers have
been used for decades to dissect such traits. Recently, genomic selection has earned …

Ridge regression and other kernels for genomic selection with R package rrBLUP

JB Endelman - The plant genome, 2011 - Wiley Online Library
Many important traits in plant breeding are polygenic and therefore recalcitrant to traditional
marker‐assisted selection. Genomic selection addresses this complexity by including all …

Reinventing quantitative genetics for plant breeding: something old, something new, something borrowed, something BLUE

R Bernardo - Heredity, 2020 - nature.com
The goals of quantitative genetics differ according to its field of application. In plant breeding,
the main focus of quantitative genetics is on identifying candidates with the best genotypic …

BLUP for phenotypic selection in plant breeding and variety testing

HP Piepho, J Möhring, AE Melchinger, A Büchse - Euphytica, 2008 - Springer
Best linear unbiased prediction (BLUP) is a standard method for estimating random effects
of a mixed model. This method was originally developed in animal breeding for estimation of …

The use of molecular genetics in the improvement of agricultural populations

JCM Dekkers, F Hospital - Nature Reviews Genetics, 2002 - nature.com
Substantial advances have been made in the genetic improvement of agriculturally
important animal and plant populations through artificial selection on quantitative traits. Most …