Applications of genotyping by sequencing in aquaculture breeding and genetics
Selective breeding is increasingly recognized as a key component of sustainable production
of aquaculture species. The uptake of genomic technology in aquaculture breeding has …
of aquaculture species. The uptake of genomic technology in aquaculture breeding has …
A new model army: Emerging fish models to study the genomics of vertebrate Evo‐Devo
I Braasch, SM Peterson, T Desvignes… - … Zoology Part B …, 2015 - Wiley Online Library
Many fields of biology—including vertebrate Evo‐Devo research—are facing an explosion of
genomic and transcriptomic sequence information and a multitude of fish species are now …
genomic and transcriptomic sequence information and a multitude of fish species are now …
Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow
The hundreds of cichlid fish species in Lake Malawi constitute the most extensive recent
vertebrate adaptive radiation. Here we characterize its genomic diversity by sequencing 134 …
vertebrate adaptive radiation. Here we characterize its genomic diversity by sequencing 134 …
Genomics of parallel ecological speciation in Lake Victoria cichlids
The genetic basis of parallel evolution of similar species is of great interest in evolutionary
biology. In the adaptive radiation of Lake Victoria cichlid fishes, sister species with either …
biology. In the adaptive radiation of Lake Victoria cichlid fishes, sister species with either …
Construction of a SNP-based genetic linkage map in cultivated peanut based on large scale marker development using next-generation double-digest restriction-site …
X Zhou, Y Xia, X Ren, Y Chen, L Huang, S Huang… - BMC genomics, 2014 - Springer
Background Cultivated peanut, or groundnut (Arachis hypogaea L.), is an important oilseed
crop with an allotetraploid genome (AABB, 2 n= 4 x= 40). In recent years, many efforts have …
crop with an allotetraploid genome (AABB, 2 n= 4 x= 40). In recent years, many efforts have …
Demographic modelling with whole‐genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization
Modes and mechanisms of speciation are best studied in young species pairs. In older taxa,
it is increasingly difficult to distinguish what happened during speciation from what …
it is increasingly difficult to distinguish what happened during speciation from what …
Construction of Ultradense Linkage Maps with Lep-MAP2: Stickleback F 2 Recombinant Crosses as an Example
High-density linkage maps are important tools for genome biology and evolutionary genetics
by quantifying the extent of recombination, linkage disequilibrium, and chromosomal …
by quantifying the extent of recombination, linkage disequilibrium, and chromosomal …
Adaptive introgression from distant Caribbean islands contributed to the diversification of a microendemic adaptive radiation of trophic specialist pupfishes
EJ Richards, CH Martin - PLoS genetics, 2017 - journals.plos.org
Rapid diversification often involves complex histories of gene flow that leave variable and
conflicting signatures of evolutionary relatedness across the genome. Identifying the extent …
conflicting signatures of evolutionary relatedness across the genome. Identifying the extent …
Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing
Background Genetic linkage maps are useful tools for mapping quantitative trait loci (QTL)
influencing variation in traits of interest in a population. Genotyping-by-sequencing …
influencing variation in traits of interest in a population. Genotyping-by-sequencing …
The Genome of the Trinidadian Guppy, Poecilia reticulata, and Variation in the Guanapo Population
A Künstner, M Hoffmann, BA Fraser, VA Kottler… - PloS one, 2016 - journals.plos.org
For over a century, the live bearing guppy, Poecilia reticulata, has been used to study sexual
selection as well as local adaptation. Natural guppy populations differ in many traits that are …
selection as well as local adaptation. Natural guppy populations differ in many traits that are …