NHEJ enzymes LigD and Ku participate in stationary-phase mutagenesis in Pseudomonas putida

Ü Paris, K Mikkel, K Tavita, S Saumaa, R Teras… - DNA repair, 2015 - Elsevier
Under growth-restricting conditions bacterial populations can rapidly evolve by a process
known as stationary-phase mutagenesis. Bacterial nonhomologous end-joining (NHEJ) …

Compiling sigma-70-dependent promoters

P Domínguez-Cuevas, S Marqués - Virulence and gene regulation, 2004 - Springer
Promoters are sequences that precede transcriptional start sites and determine recognition
by RNA polymerases to initiate transcription. Most bacterial genes are regulated at the level …

Mismatch Repair Modulation of MutY Activity Drives Bacillus subtilis Stationary-Phase Mutagenesis

BN Debora, LE Vidales, R Ramírez… - Journal of …, 2011 - Am Soc Microbiol
Stress-promoted mutations that occur in nondividing cells (adaptive mutations) have been
implicated strongly in causing genetic variability as well as in species survival and …

Error-prone processing of apurinic/apyrimidinic (AP) sites by PolX underlies a novel mechanism that promotes adaptive mutagenesis in Bacillus subtilis

RC Barajas-Ornelas, FH Ramírez-Guadiana… - Journal of …, 2014 - Am Soc Microbiol
In growing cells, apurinic/apyrimidinic (AP) sites generated spontaneously or resulting from
the enzymatic elimination of oxidized bases must be processed by AP endonucleases …

Different Spectra of Stationary-Phase Mutations in Early-Arising versus Late-Arising Mutants of Pseudomonas putida: Involvement of the DNA Repair Enzyme MutY …

S Saumaa, A Tover, L Kasak, M Kivisaar - Journal of bacteriology, 2002 - Am Soc Microbiol
Stationary-phase mutations occur in populations of stressed, nongrowing, and slowly
growing cells and allow mutant bacteria to overcome growth barriers. Mutational processes …

Bacterial strategies for growth on aromatic compounds

KW George, AG Hay - Advances in applied microbiology, 2011 - Elsevier
Although the biodegradation of aromatic compounds has been studied for over 40 years,
there is still much to learn about the strategies bacteria employ for growth on novel …

Promoter propagation in prokaryotes

M Matus-Garcia, H Nijveen… - Nucleic acids …, 2012 - academic.oup.com
Transcriptional activation or 'rewiring'of silent genes is an important, yet poorly understood,
phenomenon in prokaryotic genomes. Anecdotal evidence coming from experimental …

Dual role of NER in mutagenesis in Pseudomonas putida

M Tark, A Tover, L Koorits, R Tegova, M Kivisaar - DNA repair, 2008 - Elsevier
Nucleotide excision repair (NER) is one of the most important repair systems which
counteracts different forms of DNA damage either induced by various chemicals or …

Weakly deleterious mutations and low rates of recombination limit the impact of natural selection on bacterial genomes

MN Price, AP Arkin - MBio, 2015 - Am Soc Microbiol
Free-living bacteria are usually thought to have large effective population sizes, and so tiny
selective differences can drive their evolution. However, because recombination is …

The ColR–ColS two‐component signal transduction system is involved in regulation of Tn4652 transposition in Pseudomonas putida under starvation conditions

R Hõrak, H Ilves, P Pruunsild, M Kuljus… - Molecular …, 2004 - Wiley Online Library
Bacteria use two‐component signal transduction pathways to sense both extracellular and
intracellular environment and to coordinate cellular events according to changing …