Modeling allelic diversity of multiparent mapping populations affects detection of quantitative trait loci

SG Odell, AI Hudson, S Praud, P Dubreuil, MH Tixier… - G3, 2022 - academic.oup.com
The search for quantitative trait loci that explain complex traits such as yield and drought
tolerance has been ongoing in all crops. Methods such as biparental quantitative trait loci …

G2P Provides an Integrative Environment for Multi-model genomic selection analysis to improve genotype-to-phenotype prediction

Q Wang, S Jiang, T Li, Z Qiu, J Yan, R Fu… - Frontiers in Plant …, 2023 - frontiersin.org
Genotype-to-phenotype (G2P) prediction has become a mainstream paradigm to facilitate
genomic selection (GS)-assisted breeding in the seed industry. Many methods have been …

Genome optimization via virtual simulation to accelerate maize hybrid breeding

Q Cheng, S Jiang, F Xu, Q Wang, Y Xiao… - Briefings in …, 2022 - academic.oup.com
The employment of doubled-haploid (DH) technology in maize has vastly accelerated the
efficiency of developing inbred lines. The selection of superior lines has to rely on genotypes …

Analysis of Complex Traits and Molecular Selection in Annual Crops

C Shen - Agronomy, 2024 - mdpi.com
Annual crops, which include staple crops like rice [1], wheat [2], maize [3], cotton [4], and
soybean [5], among others, have been extensively studied for their complex traits and the …

Identification of QTL underlying the main stem related traits in a doubled haploid barley population

A Zhang, T Zhao, X Hu, Y Zhou, Y An, H Pei… - Frontiers in plant …, 2022 - frontiersin.org
Lodging reduces grain yield in cereal crops. The height, diameter and strength of stem are
crucial for lodging resistance, grain yield, and photosynthate transport in barley …

IP4GS: Bringing genomic selection analysis to breeders

T Li, S Jiang, R Fu, X Wang, Q Cheng… - Frontiers in Plant …, 2023 - frontiersin.org
Genomic selection (GS), a strategy to use genotypes to predict phenotypes via statistical or
machine learning models, has become a routine practice in plant breeding programs. GS …

Determining the nutritional values of new corn varieties on pigs and broilers

H Cao, L Yan, X Song, L Liu, S Xu, S Hu… - Frontiers in Veterinary …, 2024 - frontiersin.org
The objective of this study was to evaluate the nutritional values of three new corn varieties
(high-iron corn, cadmium-resistant corn, low-phytate phosphorus corn) cultivated with …

[HTML][HTML] A multi-locus linear mixed model methodology for detecting small-effect QTLs for quantitative traits in MAGIC, NAM, and ROAM populations

G Li, YH Zhou, HF Li, YM Zhang - Computational and Structural …, 2023 - Elsevier
Although multi-parent populations (MPPs) integrate the advantages of linkage and
association mapping populations in the genetic dissection of complex traits and especially …

Incorporating drought and marker associated traits into the DSSAT model

X Zhen - 2022 - search.proquest.com
Most agronomic traits are genetically complex and often show genotype× environment (G×
E) interactions which complicate selection and slows down the breeding progress. As model …

MaizeCUBIC: a comprehensive variation database for a maize synthetic population

J Luo, C Wei, H Liu, S Cheng, Y Xiao, X Wang, J Yan… - Database, 2020 - academic.oup.com
MaizeCUBIC is a free database that describes genomic variations, gene expression,
phenotypes and quantitative trait locus (QTLs) for a maize CUBIC population (24 founders …