Machine learning: its challenges and opportunities in plant system biology
Sequencing technologies are evolving at a rapid pace, enabling the generation of massive
amounts of data in multiple dimensions (eg, genomics, epigenomics, transcriptomic …
amounts of data in multiple dimensions (eg, genomics, epigenomics, transcriptomic …
Variation is important: warranting chromatin function and dynamics by histone variants
The chromatin of flowering plants exhibits a wide range of sequence variants of the core and
linker histones. Recent studies have demonstrated that specific histone variant enrichment …
linker histones. Recent studies have demonstrated that specific histone variant enrichment …
Coordinated histone variant H2A. Z eviction and H3. 3 deposition control plant thermomorphogenesis
F Zhao, M Xue, H Zhang, H Li, T Zhao… - New Phytologist, 2023 - Wiley Online Library
Plants can sense temperature changes and adjust their development and morphology
accordingly in a process called thermomorphogenesis. This phenotypic plasticity implies …
accordingly in a process called thermomorphogenesis. This phenotypic plasticity implies …
Histone H2A variants: Diversifying chromatin to ensure genome integrity
P Oberdoerffer, KM Miller - Seminars in cell & developmental biology, 2023 - Elsevier
Histone variants represent chromatin components that diversify the structure and function of
the genome. The variants of H2A, primarily H2A. X, H2A. Z and macroH2A, are well …
the genome. The variants of H2A, primarily H2A. X, H2A. Z and macroH2A, are well …
[HTML][HTML] Histone variants and modifications during abiotic stress response
R Nunez-Vazquez, B Desvoyes… - Frontiers in Plant …, 2022 - frontiersin.org
Plants have developed multiple mechanisms as an adaptive response to abiotic stresses,
such as salinity, drought, heat, cold, and oxidative stress. Understanding these regulatory …
such as salinity, drought, heat, cold, and oxidative stress. Understanding these regulatory …
Comparative transcriptomics of seed nourishing tissues: uncovering conserved and divergent pathways in seed plants
AM Florez‐Rueda, CM Miguel… - The Plant …, 2023 - Wiley Online Library
The evolutionary and ecological success of spermatophytes is intrinsically linked to the seed
habit, which provides a protective environment for the initial development of the new …
habit, which provides a protective environment for the initial development of the new …
Histone dynamics responding to internal and external cues underlying plant development
YJ Cheng, JW Wang, R Ye - Plant physiology, 2024 - academic.oup.com
Plants necessitate a refined coordination of growth and development to effectively respond
to external triggers for survival and successful reproduction. This intricate harmonization of …
to external triggers for survival and successful reproduction. This intricate harmonization of …
[HTML][HTML] Advances in biological functions and mechanisms of histone variants in plants
X Wu, X Zhang, B Huang, J Han, H Fang - Frontiers in Genetics, 2023 - frontiersin.org
Nucleosome is the basic subunit of chromatin, consisting of approximately 147bp DNA
wrapped around a histone octamer, containing two copies of H2A, H2B, H3 and H4. A linker …
wrapped around a histone octamer, containing two copies of H2A, H2B, H3 and H4. A linker …
[HTML][HTML] Seed longevity and genome damage
W Waterworth, A Balobaid, C West - Bioscience Reports, 2024 - portlandpress.com
Seeds are the mode of propagation for most plant species and form the basis of both
agriculture and ecosystems. Desiccation tolerant seeds, representative of most crop species …
agriculture and ecosystems. Desiccation tolerant seeds, representative of most crop species …
Histone chaperones AtChz1A and AtChz1B are required for H2A.Z deposition and interact with the SWR1 chromatin‐remodeling complex in Arabidopsis thaliana
J Wu, Y Yang, J Wang, Y Wang, L Yin, Z An… - New …, 2023 - Wiley Online Library
The histone variant H2A. Z plays key functions in transcription and genome stability in all
eukaryotes ranging from yeast to human, but the molecular mechanisms by which H2A. Z is …
eukaryotes ranging from yeast to human, but the molecular mechanisms by which H2A. Z is …