Geometric deep learning on molecular representations

K Atz, F Grisoni, G Schneider - Nature Machine Intelligence, 2021 - nature.com
Geometric deep learning (GDL) is based on neural network architectures that incorporate
and process symmetry information. GDL bears promise for molecular modelling applications …

Identification and prioritization of environmental organic pollutants: from an analytical and toxicological perspective

T Ruan, P Li, H Wang, T Li, G Jiang - Chemical Reviews, 2023 - ACS Publications
Exposure to environmental organic pollutants has triggered significant ecological impacts
and adverse health outcomes, which have been received substantial and increasing …

[HTML][HTML] Machine learning in chemical engineering: strengths, weaknesses, opportunities, and threats

MR Dobbelaere, PP Plehiers, R Van de Vijver… - Engineering, 2021 - Elsevier
Chemical engineers rely on models for design, research, and daily decision-making, often
with potentially large financial and safety implications. Previous efforts a few decades ago to …

[HTML][HTML] Recent advances in computational modeling of MOFs: From molecular simulations to machine learning

H Demir, H Daglar, HC Gulbalkan, GO Aksu… - Coordination Chemistry …, 2023 - Elsevier
The reticular chemistry of metal–organic frameworks (MOFs) allows for the generation of an
almost boundless number of materials some of which can be a substitute for the traditionally …

SELFIES and the future of molecular string representations

M Krenn, Q Ai, S Barthel, N Carson, A Frei, NC Frey… - Patterns, 2022 - cell.com
Artificial intelligence (AI) and machine learning (ML) are expanding in popularity for broad
applications to challenging tasks in chemistry and materials science. Examples include the …

Deep learning for molecular design—a review of the state of the art

DC Elton, Z Boukouvalas, MD Fuge… - … Systems Design & …, 2019 - pubs.rsc.org
In the space of only a few years, deep generative modeling has revolutionized how we think
of artificial creativity, yielding autonomous systems which produce original images, music …

Generative models for de novo drug design

X Tong, X Liu, X Tan, X Li, J Jiang, Z Xiong… - Journal of Medicinal …, 2021 - ACS Publications
Artificial intelligence (AI) is booming. Among various AI approaches, generative models
have received much attention in recent years. Inspired by these successes, researchers are …

Deep learning in chemistry

AC Mater, ML Coote - Journal of chemical information and …, 2019 - ACS Publications
Machine learning enables computers to address problems by learning from data. Deep
learning is a type of machine learning that uses a hierarchical recombination of features to …

Software tools and approaches for compound identification of LC-MS/MS data in metabolomics

I Blaženović, T Kind, J Ji, O Fiehn - Metabolites, 2018 - mdpi.com
The annotation of small molecules remains a major challenge in untargeted mass
spectrometry-based metabolomics. We here critically discuss structured elucidation …

Automatic chemical design using a data-driven continuous representation of molecules

R Gómez-Bombarelli, JN Wei, D Duvenaud… - ACS central …, 2018 - ACS Publications
We report a method to convert discrete representations of molecules to and from a
multidimensional continuous representation. This model allows us to generate new …