Industrial biotechnology of Pseudomonas putida: advances and prospects
Pseudomonas putida is a Gram-negative, rod-shaped bacterium that can be encountered in
diverse ecological habitats. This ubiquity is traced to its remarkably versatile metabolism …
diverse ecological habitats. This ubiquity is traced to its remarkably versatile metabolism …
Using genome-scale models to predict biological capabilities
Constraint-based reconstruction and analysis (COBRA) methods at the genome scale have
been under development since the first whole-genome sequences appeared in the mid …
been under development since the first whole-genome sequences appeared in the mid …
Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems
AR Pacheco, M Moel, D Segrè - Nature communications, 2019 - nature.com
Metabolic exchange mediates interactions among microbes, helping explain diversity in
microbial communities. As these interactions often involve a fitness cost, it is unclear how …
microbial communities. As these interactions often involve a fitness cost, it is unclear how …
A systematic assessment of current genome-scale metabolic reconstruction tools
Background Several genome-scale metabolic reconstruction software platforms have been
developed and are being continuously updated. These tools have been widely applied to …
developed and are being continuously updated. These tools have been widely applied to …
The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis
E Belda, RGA Van Heck… - Environmental …, 2016 - Wiley Online Library
By the time the complete genome sequence of the soil bacterium Pseudomonas putida
KT2440 was published in 2002 (Nelson et al.,) this bacterium was considered a potential …
KT2440 was published in 2002 (Nelson et al.,) this bacterium was considered a potential …
Understanding the antimicrobial mechanism of TiO2-based nanocomposite films in a pathogenic bacterium
Abstract Titania (TiO2)-based nanocomposites subjected to light excitation are remarkably
effective in eliciting microbial death. However, the mechanism by which these materials …
effective in eliciting microbial death. However, the mechanism by which these materials …
High‐quality genome‐scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities
Genome‐scale reconstructions of metabolism are computational species‐specific
knowledge bases able to compute systemic metabolic properties. We present a …
knowledge bases able to compute systemic metabolic properties. We present a …
Engineering Native and Synthetic Pathways in Pseudomonas putida for the Production of Tailored Polyhydroxyalkanoates
Growing environmental concern sparks renewed interest in the sustainable production of
(bio) materials that can replace oil‐derived goods. Polyhydroxyalkanoates (PHAs) are …
(bio) materials that can replace oil‐derived goods. Polyhydroxyalkanoates (PHAs) are …
Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions
The laboratory rat has been used as a surrogate to study human biology for more than a
century. Here we present the first genome-scale network reconstruction of Rattus norvegicus …
century. Here we present the first genome-scale network reconstruction of Rattus norvegicus …
[HTML][HTML] Biobased PET from lignin using an engineered cis, cis-muconate-producing Pseudomonas putida strain with superior robustness, energy and redox …
M Kohlstedt, A Weimer, F Weiland, J Stolzenberger… - Metabolic …, 2022 - Elsevier
Polyethylene terephthalate (PET), the most common synthetic polyester today, is largely
produced from fossil resources, contributing to global warming. Consequently, sustainable …
produced from fossil resources, contributing to global warming. Consequently, sustainable …