Genome-wide analysis of RNA secondary structure

PC Bevilacqua, LE Ritchey, Z Su… - Annual review of …, 2016 - annualreviews.org
Single-stranded RNA molecules fold into extraordinarily complicated secondary and tertiary
structures as a result of intramolecular base pairing. In vivo, these RNA structures are not …

Mechanism and regulation of mRNA polyadenylation

DF Colgan, JL Manley - Genes & development, 1997 - genesdev.cshlp.org
A poly (A) tail is found at the 3 end of nearly every fully processed eukaryotic mRNA and has
been suggested to influence virtually all aspects of mRNA metabolism. Its proposed …

Formation of mRNA 3′ ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis

J Zhao, L Hyman, C Moore - Microbiology and molecular biology …, 1999 - Am Soc Microbiol
Formation of mRNA 3′ ends in eukaryotes requires the interaction of transacting factors
with cis-acting signal elements on the RNA precursor by two distinct mechanisms, one for …

3′ end mRNA processing: molecular mechanisms and implications for health and disease

S Danckwardt, MW Hentze, AE Kulozik - The EMBO journal, 2008 - embopress.org
Recent advances in the understanding of the molecular mechanism of mRNA 3′ end
processing have uncovered a previously unanticipated integrated network of transcriptional …

Human Fip1 is a subunit of CPSF that binds to U‐rich RNA elements and stimulates poly (A) polymerase

I Kaufmann, G Martin, A Friedlein, H Langen… - The EMBO …, 2004 - embopress.org
In mammals, polyadenylation of mRNA precursors (pre‐mRNAs) by poly (A) polymerase
(PAP) depends on cleavage and polyadenylation specificity factor (CPSF). CPSF is a …

3′-End processing of pre-mRNA in eukaryotes

E Wahle, U Rüegsegger - FEMS microbiology reviews, 1999 - academic.oup.com
Ends of almost all eukaryotic mRNAs are generated by endonucleolytic cleavage and
addition of a poly (A) tail. In mammalian cells, the reaction depends on the sequence …

Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation

JUN Hu, CS Lutz, J Wilusz, BIN Tian - Rna, 2005 - rnajournal.cshlp.org
Polyadenylation is an essential step for the maturation of almost all cellular mRNAs in
eukaryotes. In human cells, most poly (A) sites are flanked by the upstream AAUAAA …

Pre‐mRNA 3′‐end processing complex assembly and function

S Chan, EA Choi, Y Shi - Wiley Interdisciplinary Reviews: RNA, 2011 - Wiley Online Library
The 3′‐ends of almost all eukaryotic mRNAs are formed in a two‐step process, an
endonucleolytic cleavage followed by polyadenylation (the addition of a poly‐adenosine or …

[PDF][PDF] Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3′ end processing and splicing

A Kyburz, A Friedlein, H Langen, W Keller - Molecular cell, 2006 - cell.com
Eukaryotic pre-mRNAs are capped at their 5′ ends, polyadenylated at their 3′ ends, and
spliced before being exported from the nucleus to the cytoplasm. Although the three …

[PDF][PDF] Human pre-mRNA cleavage factor Im is related to spliceosomal SR proteins and can be reconstituted in vitro from recombinant subunits

U Rüegsegger, D Blank, W Keller - Molecular cell, 1998 - cell.com
Abstract Four polypeptides of 25, 59, 68, and 72 kDa copurify with the activity of human
cleavage factor I m (CF I m) involved in pre-mRNA 3′ end processing. We report here the …