Fungal genomes and insights into the evolution of the kingdom

JE Stajich - Microbiology spectrum, 2017 - Am Soc Microbiol
The kingdom Fungi comprises species that inhabit nearly all ecosystems. Fungi exist as both
free-living and symbiotic unicellular and multicellular organisms with diverse morphologies …

The genome sequences of 90 mushrooms

H Li, S Wu, X Ma, W Chen, J Zhang, S Duan, Y Gao… - Scientific reports, 2018 - nature.com
Macrofungus is defined as the fungus that grows an observable sporocarp. The sporocarps
of many species are commonly called mushrooms and consumed by people all around the …

Increasing the production of the bioactive compounds in medicinal mushrooms: an omics perspective

N Arshadi, H Nouri, H Moghimi - Microbial Cell Factories, 2023 - Springer
Macroscopic fungi, mainly higher basidiomycetes and some ascomycetes, are considered
medicinal mushrooms and have long been used in different areas due to their …

The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

L Sützl, G Foley, EMJ Gillam, M Bodén… - Biotechnology for …, 2019 - Springer
Background The glucose–methanol–choline (GMC) superfamily is a large and functionally
diverse family of oxidoreductases that share a common structural fold. Fungal members of …

Genome-based engineering of ligninolytic enzymes in fungi

MD Asemoloye, MA Marchisio, VK Gupta… - Microbial cell …, 2021 - Springer
Background Many fungi grow as saprobic organisms and obtain nutrients from a wide range
of dead organic materials. Among saprobes, fungal species that grow on wood or in polluted …

Uncovering the hidden diversity of litter-decomposition mechanisms in mushroom-forming fungi

D Floudas, J Bentzer, D Ahrén, T Johansson… - The ISME …, 2020 - academic.oup.com
Litter decomposing Agaricales play key role in terrestrial carbon cycling, but little is known
about their decomposition mechanisms. We assembled datasets of 42 gene families …

Delimiting species in Basidiomycota: a review

B Cao, D Haelewaters, N Schoutteten, D Begerow… - Fungal Diversity, 2021 - Springer
Species delimitation is one of the most fundamental processes in biology. Biodiversity
undertakings, for instance, require explicit species concepts and criteria for species …

Evolutionary convergence in lignin-degrading enzymes

I Ayuso-Fernández, FJ Ruiz-Dueñas… - Proceedings of the …, 2018 - National Acad Sciences
The resurrection of ancestral enzymes of now-extinct organisms (paleogenetics) is a
developing field that allows the study of evolutionary hypotheses otherwise impossible to be …

Gene regulation shifts shed light on fungal adaption in plant biomass decomposers

J Zhang, KAT Silverstein, JD Castaño, M Figueroa… - MBio, 2019 - Am Soc Microbiol
Fungi dominate the recycling of carbon sequestered in woody biomass. This process of
organic turnover was first evolved among “white rot” fungi that degrade lignin to access …

Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae

É Almási, N Sahu, K Krizsán, B Bálint… - New …, 2019 - Wiley Online Library
Agaricomycetes are fruiting body‐forming fungi that produce some of the most efficient
enzyme systems to degrade wood. Despite decades‐long interest in their biology, the …