[HTML][HTML] Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding
New types of phenotyping tools generate large amounts of data on many aspects of plant
physiology and morphology with high spatial and temporal resolution. These new …
physiology and morphology with high spatial and temporal resolution. These new …
[HTML][HTML] Physiological adaptive traits are a potential allele reservoir for maize genetic progress under challenging conditions
C Welcker, NA Spencer, O Turc, I Granato… - Nature …, 2022 - nature.com
Combined phenomic and genomic approaches are required to evaluate the margin of
progress of breeding strategies. Here, we analyze 65 years of genetic progress in maize …
progress of breeding strategies. Here, we analyze 65 years of genetic progress in maize …
[HTML][HTML] Improving genomic prediction using high-dimensional secondary phenotypes
B Arouisse, TPJM Theeuwen, FA Van Eeuwijk… - Frontiers in …, 2021 - frontiersin.org
In the past decades, genomic prediction has had a large impact on plant breeding. Given the
current advances of high-throughput phenotyping and sequencing technologies, it is …
current advances of high-throughput phenotyping and sequencing technologies, it is …
[HTML][HTML] Carbon isotope composition, water use efficiency, and drought sensitivity are controlled by a common genomic segment in maize
V Avramova, A Meziane, E Bauer… - Theoretical and Applied …, 2019 - Springer
Key message A genomic segment on maize chromosome 7 influences carbon isotope
composition, water use efficiency, and leaf growth sensitivity to drought, possibly by affecting …
composition, water use efficiency, and leaf growth sensitivity to drought, possibly by affecting …
Genomic Bayesian confirmatory factor analysis and Bayesian network to characterize a wide spectrum of rice phenotypes
With the advent of high-throughput phenotyping platforms, plant breeders have a means to
assess many traits for large breeding populations. However, understanding the genetic …
assess many traits for large breeding populations. However, understanding the genetic …
[HTML][HTML] Utilizing trait networks and structural equation models as tools to interpret multi-trait genome-wide association studies
Background Plant breeders seek to develop cultivars with maximal agronomic value, which
is often assessed using numerous, often genetically correlated traits. As intervention on one …
is often assessed using numerous, often genetically correlated traits. As intervention on one …
Rewiring network plasticity to improve crops
M Hetti‐Arachchilage, GS Challa… - Plant Breeding …, 2021 - Wiley Online Library
Plant systems show dynamic responses, such as changes in architecture and physiology, to
adjust their growth in changing environments. The reconfiguration of network modules …
adjust their growth in changing environments. The reconfiguration of network modules …
Modeling multiple phenotypes in wheat using data‐driven genomic exploratory factor analysis and Bayesian network learning
Inferring trait networks from a large volume of genetically correlated diverse phenotypes
such as yield, architecture, and disease resistance can provide information on the manner in …
such as yield, architecture, and disease resistance can provide information on the manner in …
Reconstruction of networks with direct and indirect genetic effects
Genetic variance of a phenotypic trait can originate from direct genetic effects, or from
indirect effects, ie, through genetic effects on other traits, affecting the trait of interest. This …
indirect effects, ie, through genetic effects on other traits, affecting the trait of interest. This …
Bayesian network analysis of plasma microRNA sequencing data in patients with venous thrombosis
F Thibord, G Munsch, C Perret, P Suchon… - European Heart …, 2020 - academic.oup.com
MicroRNAs (miRNAs) are small regulatory RNAs participating to several biological
processes and known to be involved in various pathologies. Measurable in body fluids …
processes and known to be involved in various pathologies. Measurable in body fluids …