Modulation of cellular processes by histone and non-histone protein acetylation

M Shvedunova, A Akhtar - Nature reviews Molecular cell biology, 2022 - nature.com
Lysine acetylation is a widespread and versatile protein post-translational modification.
Lysine acetyltransferases and lysine deacetylases catalyse the addition or removal …

Eukaryotic core promoters and the functional basis of transcription initiation

V Haberle, A Stark - Nature reviews Molecular cell biology, 2018 - nature.com
Abstract RNA polymerase II (Pol II) core promoters are specialized DNA sequences at
transcription start sites of protein-coding and non-coding genes that support the assembly of …

A high-resolution protein architecture of the budding yeast genome

MJ Rossi, PK Kuntala, WKM Lai, N Yamada, N Badjatia… - Nature, 2021 - nature.com
The genome-wide architecture of chromatin-associated proteins that maintains chromosome
integrity and gene regulation is not well defined. Here we use chromatin …

Eukaryotic cell size control and its relation to biosynthesis and senescence

S Xie, M Swaffer, JM Skotheim - Annual review of cell and …, 2022 - annualreviews.org
The most fundamental feature of cellular form is size, which sets the scale of all cell
biological processes. Growth, form, and function are all necessarily linked in cell biology, but …

[HTML][HTML] Transcription shapes genome-wide histone acetylation patterns

BJE Martin, J Brind'Amour, A Kuzmin… - Nature …, 2021 - nature.com
Histone acetylation is a ubiquitous hallmark of transcription, but whether the link between
histone acetylation and transcription is causal or consequential has not been addressed …

[HTML][HTML] Human transcription factor protein interaction networks

H Göös, M Kinnunen, K Salokas, Z Tan, X Liu… - Nature …, 2022 - nature.com
Transcription factors (TFs) interact with several other proteins in the process of
transcriptional regulation. Here, we identify 6703 and 1536 protein–protein interactions for …

[HTML][HTML] Glucose starvation induces a switch in the histone acetylome for activation of gluconeogenic and fat metabolism genes

WC Hsieh, BM Sutter, H Ruess, SD Barnes, VS Malladi… - Molecular cell, 2022 - cell.com
Acetyl-CoA is a key intermediate situated at the intersection of many metabolic pathways.
The reliance of histone acetylation on acetyl-CoA enables the coordination of gene …

RNA polymerase II dynamics and mRNA stability feedback scale mRNA amounts with cell size

MP Swaffer, GK Marinov, H Zheng, LF Valenzuela… - Cell, 2023 - cell.com
A fundamental feature of cellular growth is that total protein and RNA amounts increase with
cell size to keep concentrations approximately constant. A key component of this is that …

[HTML][HTML] Transcription of nearly all yeast RNA polymerase II-transcribed genes is dependent on transcription factor TFIID

L Warfield, S Ramachandran, T Baptista, D Devys… - Molecular cell, 2017 - cell.com
Previous studies suggested that expression of most yeast mRNAs is dominated by either
transcription factor TFIID or SAGA. We re-examined the role of TFIID by rapid depletion of S …

Mechanisms of cellular mRNA transcript homeostasis

S Berry, L Pelkmans - Trends in Cell Biology, 2022 - cell.com
For most genes, mRNA transcript abundance scales with cell size to ensure a constant
concentration. Scaling of mRNA synthesis rates with cell size plays an important role, with …