[HTML][HTML] Epigenome-wide association studies: current knowledge, strategies and recommendations

MP Campagna, A Xavier, J Lechner-Scott, V Maltby… - Clinical …, 2021 - Springer
The aetiology and pathophysiology of complex diseases are driven by the interaction
between genetic and environmental factors. The variability in risk and outcomes in these …

[HTML][HTML] Analysis of transcriptome and epitranscriptome in plants using PacBio Iso-Seq and nanopore-based direct RNA sequencing

L Zhao, H Zhang, MV Kohnen, KVSK Prasad… - Frontiers in …, 2019 - frontiersin.org
Nanopore sequencing from Oxford Nanopore Technologies (ONT) and Pacific BioSciences
(PacBio) single-molecule real-time (SMRT) long-read isoform sequencing (Iso-Seq) are …

[HTML][HTML] Methodologies for transcript profiling using long-read technologies

S Oikonomopoulos, A Bayega, S Fahiminiya… - Frontiers in …, 2020 - frontiersin.org
RNA sequencing using next-generation sequencing technologies (NGS) is currently the
standard approach for gene expression profiling, particularly for large-scale high-throughput …

Advances and applications of single‐cell omics technologies in plant research

Y Mo, Y Jiao - The Plant Journal, 2022 - Wiley Online Library
Single‐cell sequencing approaches reveal the intracellular dynamics of individual cells and
answer biological questions with high‐dimensional catalogs of millions of cells, including …

[HTML][HTML] Analysis and comprehensive comparison of PacBio and nanopore-based RNA sequencing of the Arabidopsis transcriptome

J Cui, N Shen, Z Lu, G Xu, Y Wang, B Jin - Plant Methods, 2020 - Springer
Background The number of studies using third-generation sequencing utilising Pacific
Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) is rapidly increasing in …

Long-chain polyphosphates impair SARS-CoV-2 infection and replication

V Ferrucci, DY Kong, F Asadzadeh, L Marrone… - Science …, 2021 - science.org
Inorganic polyphosphates (polyPs) are linear polymers composed of repeated phosphate
(PO43−) units linked together by multiple high-energy phosphoanhydride bonds. In addition …

Functions and mechanisms of RNA helicases in plants

X Li, C Li, J Zhu, S Zhong, H Zhu… - Journal of Experimental …, 2023 - academic.oup.com
RNA helicases (RHs) are a family of ubiquitous enzymes that alter RNA structures and
remodel ribonucleoprotein complexes typically using energy from the hydrolysis of ATP …

[HTML][HTML] Nanopore-based full-length transcriptome sequencing of Muscovy duck (Cairina moschata) ovary

J Lin, L Guan, L Ge, G Liu, Y Bai, X Liu - Poultry science, 2021 - Elsevier
Unlike mammals, studies on mechanisms that regulate waterfowl ovulation have been rarely
reported. To advance our understanding of the ovulation differences in Muscovy duck, we …

[HTML][HTML] Large-scale multiplexing permits full-length transcriptome annotation of 32 bovine tissues from a single nanopore flow cell

MM Halstead, A Islas-Trejo, DE Goszczynski… - Frontiers in …, 2021 - frontiersin.org
A comprehensive annotation of transcript isoforms in domesticated species is lacking.
Especially considering that transcriptome complexity and splicing patterns are not well …

[HTML][HTML] Unraveling the complexity of faba bean (Vicia faba L.) transcriptome to reveal cold-stress-responsive genes using long-read isoform sequencing technology

JI Lyu, R Ramekar, JM Kim, NN Hung, JS Seo… - Scientific reports, 2021 - nature.com
Faba bean (Vicia faba L.), a globally important grain legume providing a stable source of
dietary protein, was one of the earliest plant cytogenetic models. However, the lack of draft …