[HTML][HTML] A scalable strand-specific protocol enabling full-length total RNA sequencing from single cells

S Haile, RD Corbett, VG LeBlanc, L Wei… - Frontiers in …, 2021 - frontiersin.org
RNA sequencing (RNAseq) has been widely used to generate bulk gene expression
measurements collected from pools of cells. Only relatively recently have single-cell …

An NMF-based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq data

H Matsumoto, T Hayashi, H Ozaki… - NAR Genomics and …, 2020 - academic.oup.com
Single-cell RNA sequencing has enabled researchers to quantify the transcriptomes of
individual cells, infer cell types and investigate differential expression among cell types …

[PDF][PDF] Quantifying variability in gene expression profiles using transcriptome and isoform diversity

E Jones, A Haldar, V Oza, B Lasseigne - Preprints, 2023 - scholar.archive.org
Following the central dogma of molecular biology, gene expression variability can aid in
predicting and explaining the wide variety of protein products, functions, and, ultimately …

Prospects of Identifying Alternative Splicing Events from Single-Cell RNA Sequencing Data

J Wang, L Yuan - Current Bioinformatics, 2024 - ingentaconnect.com
Background: The advent of single-cell RNA sequencing (scRNA-seq) technology has
offered unprecedented opportunities to unravel cellular heterogeneity and functions. Yet …

[图书][B] Integrative Omics Data Analysis to Discover Novel Signatures in Complex Diseases

L Pan - 2023 - search.proquest.com
Apart from diseases caused by the defect of a single gene, most diseases are highly
complex and are usually caused by a combination of biological and environmental factors …

[HTML][HTML] scAPAmod: Profiling Alternative Polyadenylation Modalities in Single Cells from Single-Cell RNA-Seq Data

L Qian, H Fu, Y Mou, W Lin, L Ye, G Ji - International Journal of Molecular …, 2022 - mdpi.com
Alternative polyadenylation (APA) is a key layer of gene expression regulation, and APA
choice is finely modulated in cells. Advances in single-cell RNA-seq (scRNA-seq) have …

Transcriptomic Analysis of Healthy Skeletal Muscle to Identify Modulators of Differential Skeletal Muscle Susceptibility in Duchenne Muscular Dystrophy

SN Rodríguez - 2023 - search.proquest.com
Duchenne muscular dystrophy (DMD) is a progressive muscle disease caused by mutations
in the DMD gene encoding for the structural muscle protein dystrophin. Absence of …

Integration of hyperspectral imaging and transcriptomics from individual cells with HyperSeq

Y Xie, A Habibalahi, AG Anwer, K Wahi, C Gatt… - bioRxiv, 2024 - biorxiv.org
Microscopy and omics are complementary approaches to probe the molecular state of cells
in health and disease, combining granularity with scalability. While important advances have …

[PDF][PDF] Modern computer science approaches in biology: from predicting molecular functions to modeling protein structure

O Narykov - University of Virginia, 2022 - digital.wpi.edu
Computational machines have become an inseparable part of human lives during the last
three decades. One of the crucial enabling technologies of this technological boom is …

BRACE: A novel Bayesian-based imputation approach for dimension reduction analysis of alternative splicing at single-cell resolution

S Wen - bioRxiv, 2024 - biorxiv.org
Bayesian approach is a powerful tool to solve challenging questions in life sciences. One
such area of life sciences in which Bayesian approach has seen an increased utility in the …