Alternative splicing, RNA-seq and drug discovery

S Zhao - Drug discovery today, 2019 - Elsevier
Highlights•RNA-seq is emerging as a powerful technology to study alternative splicing.•RNA
mis-splicing can cause cancers and a variety of other human diseases.•To target alternative …

[HTML][HTML] Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single macrophages infected with Candida albicans

JF Muñoz, T Delorey, CB Ford, BY Li… - Nature …, 2019 - nature.com
The outcome of fungal infections depends on interactions with innate immune cells. Within a
population of macrophages encountering Candida albicans, there are distinct host …

[HTML][HTML] Serotonin limits generation of chromaffin cells during adrenal organ development

P Kameneva, VI Melnikova, ME Kastriti… - Nature …, 2022 - nature.com
Adrenal glands are the major organs releasing catecholamines and regulating our stress
response. The mechanisms balancing generation of adrenergic chromaffin cells and …

RNA splicing programs define tissue compartments and cell types at single-cell resolution

JE Olivieri, R Dehghannasiri, PL Wang, SR Jang… - Elife, 2021 - elifesciences.org
The extent splicing is regulated at single-cell resolution has remained controversial due to
both available data and methods to interpret it. We apply the SpliZ, a new statistical …

[HTML][HTML] CamoTSS: analysis of alternative transcription start sites for cellular phenotypes and regulatory patterns from 5'scRNA-seq data

R Hou, CC Hon, Y Huang - Nature Communications, 2023 - nature.com
Five-prime single-cell RNA-seq (scRNA-seq) has been widely employed to profile cellular
transcriptomes, however, its power of analysing transcription start sites (TSS) has not been …

[HTML][HTML] BRIE2: computational identification of splicing phenotypes from single-cell transcriptomic experiments

Y Huang, G Sanguinetti - Genome biology, 2021 - Springer
RNA splicing is an important driver of heterogeneity in single cells through the expression of
alternative transcripts and as a determinant of transcriptional kinetics. However, the intrinsic …

Quantifying transcriptome diversity: a review

EF Jones, A Haldar, VH Oza… - Briefings in Functional …, 2024 - academic.oup.com
Following the central dogma of molecular biology, gene expression heterogeneity can aid in
predicting and explaining the wide variety of protein products, functions and, ultimately …

MARVEL: an integrated alternative splicing analysis platform for single-cell RNA sequencing data

WX Wen, AJ Mead, S Thongjuea - Nucleic Acids Research, 2023 - academic.oup.com
Alternative splicing is an important source of heterogeneity underlying gene expression
between individual cells but remains an understudied area due to the paucity of …

Advances in analyzing virus-induced alterations of host cell splicing

U Ashraf, C Benoit-Pilven, V Lacroix, V Navratil… - Trends in …, 2019 - cell.com
Alteration of host cell splicing is a common feature of many viral infections which is
underappreciated because of the complexity and technical difficulty of studying alternative …

Coverage-dependent bias creates the appearance of binary splicing in single cells

CF Buen Abad Najar, N Yosef, LF Lareau - Elife, 2020 - elifesciences.org
Single-cell RNA sequencing provides powerful insight into the factors that determine each
cell's unique identity. Previous studies led to the surprising observation that alternative …