Alternative splicing, RNA-seq and drug discovery
S Zhao - Drug discovery today, 2019 - Elsevier
Highlights•RNA-seq is emerging as a powerful technology to study alternative splicing.•RNA
mis-splicing can cause cancers and a variety of other human diseases.•To target alternative …
mis-splicing can cause cancers and a variety of other human diseases.•To target alternative …
[HTML][HTML] Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single macrophages infected with Candida albicans
The outcome of fungal infections depends on interactions with innate immune cells. Within a
population of macrophages encountering Candida albicans, there are distinct host …
population of macrophages encountering Candida albicans, there are distinct host …
[HTML][HTML] Serotonin limits generation of chromaffin cells during adrenal organ development
P Kameneva, VI Melnikova, ME Kastriti… - Nature …, 2022 - nature.com
Adrenal glands are the major organs releasing catecholamines and regulating our stress
response. The mechanisms balancing generation of adrenergic chromaffin cells and …
response. The mechanisms balancing generation of adrenergic chromaffin cells and …
RNA splicing programs define tissue compartments and cell types at single-cell resolution
The extent splicing is regulated at single-cell resolution has remained controversial due to
both available data and methods to interpret it. We apply the SpliZ, a new statistical …
both available data and methods to interpret it. We apply the SpliZ, a new statistical …
[HTML][HTML] CamoTSS: analysis of alternative transcription start sites for cellular phenotypes and regulatory patterns from 5'scRNA-seq data
Five-prime single-cell RNA-seq (scRNA-seq) has been widely employed to profile cellular
transcriptomes, however, its power of analysing transcription start sites (TSS) has not been …
transcriptomes, however, its power of analysing transcription start sites (TSS) has not been …
[HTML][HTML] BRIE2: computational identification of splicing phenotypes from single-cell transcriptomic experiments
Y Huang, G Sanguinetti - Genome biology, 2021 - Springer
RNA splicing is an important driver of heterogeneity in single cells through the expression of
alternative transcripts and as a determinant of transcriptional kinetics. However, the intrinsic …
alternative transcripts and as a determinant of transcriptional kinetics. However, the intrinsic …
Quantifying transcriptome diversity: a review
Following the central dogma of molecular biology, gene expression heterogeneity can aid in
predicting and explaining the wide variety of protein products, functions and, ultimately …
predicting and explaining the wide variety of protein products, functions and, ultimately …
MARVEL: an integrated alternative splicing analysis platform for single-cell RNA sequencing data
WX Wen, AJ Mead, S Thongjuea - Nucleic Acids Research, 2023 - academic.oup.com
Alternative splicing is an important source of heterogeneity underlying gene expression
between individual cells but remains an understudied area due to the paucity of …
between individual cells but remains an understudied area due to the paucity of …
Advances in analyzing virus-induced alterations of host cell splicing
Alteration of host cell splicing is a common feature of many viral infections which is
underappreciated because of the complexity and technical difficulty of studying alternative …
underappreciated because of the complexity and technical difficulty of studying alternative …
Coverage-dependent bias creates the appearance of binary splicing in single cells
Single-cell RNA sequencing provides powerful insight into the factors that determine each
cell's unique identity. Previous studies led to the surprising observation that alternative …
cell's unique identity. Previous studies led to the surprising observation that alternative …