[HTML][HTML] Detection of genomic structural variants from next-generation sequencing data

L Tattini, R D'Aurizio, A Magi - Frontiers in bioengineering and …, 2015 - frontiersin.org
Structural variants are genomic rearrangements larger than 50 bp accounting for around 1%
of the variation among human genomes. They impact on phenotypic diversity and play a role …

Rare inherited kidney diseases: challenges, opportunities, and perspectives

O Devuyst, NVAM Knoers, G Remuzzi, F Schaefer - The Lancet, 2014 - thelancet.com
At least 10% of adults and nearly all children who receive renal-replacement therapy have
an inherited kidney disease. These patients rarely die when their disease progresses and …

A first look at the Oxford Nanopore MinION sequencer

AS Mikheyev, MMY Tin - Molecular ecology resources, 2014 - Wiley Online Library
Oxford Nanopore's third‐generation single‐molecule sequencing platform promises to
decrease costs for reagents and instrumentation. After a 2‐year hiatus following the initial …

The clinical relevance of cancer cell lines

JP Gillet, S Varma, MM Gottesman - Journal of the National …, 2013 - academic.oup.com
Although advances in genomics during the last decade have opened new avenues for
translational research and allowed the direct evaluation of clinical samples, there is still a …

Evolution of genetic techniques: past, present, and beyond

AA Durmaz, E Karaca, U Demkow… - BioMed research …, 2015 - Wiley Online Library
Genetics is the study of heredity, which means the study of genes and factors related to all
aspects of genes. The scientific history of genetics began with the works of Gregor Mendel in …

Bioinformatics for clinical next generation sequencing

GR Oliver, SN Hart, EW Klee - Clinical chemistry, 2015 - academic.oup.com
BACKGROUND Next generation sequencing (NGS)-based assays continue to redefine the
field of genetic testing. Owing to the complexity of the data, bioinformatics has become a …

Factors affecting the success of next‐generation sequencing in cytology specimens

S Roy‐Chowdhuri, RS Goswami, H Chen… - Cancer …, 2015 - Wiley Online Library
BACKGROUND The use of cytology specimens for next‐generation sequencing (NGS) is
particularly challenging because of the unconventional substrate of smears and the often …

Preanalytic variables in cytology: lessons learned from next-generation sequencing—the MD Anderson experience

S Roy-Chowdhuri, J Stewart - Archives of Pathology & …, 2016 - meridian.allenpress.com
Context.—As our understanding of genomic alterations underlying solid tumor malignancies
continues to evolve, molecular testing of tumor samples is increasingly used to guide …

Next generation sequencing in cancer research and clinical application

D Shyr, Q Liu - Biological procedures online, 2013 - Springer
The wide application of next-generation sequencing (NGS), mainly through whole genome,
exome and transcriptome sequencing, provides a high-resolution and global view of the …

Analysis of pre-analytic factors affecting the success of clinical next-generation sequencing of solid organ malignancies

H Chen, R Luthra, RS Goswami, RR Singh… - Cancers, 2015 - mdpi.com
Application of next-generation sequencing (NGS) technology to routine clinical practice has
enabled characterization of personalized cancer genomes to identify patients likely to have …