Cryptococcus neoformans: historical curiosity to modern pathogen

D Srikanta, FH Santiago‐Tirado, TL Doering - Yeast, 2014 - Wiley Online Library
The importance of the Basidiomycete Cryptococcus neoformans to human health has
stimulated its development as an experimental model for both basic physiology and …

Introns as gene regulators: a brick on the accelerator

AB Rose - Frontiers in genetics, 2019 - frontiersin.org
A picture is beginning to emerge from a variety of organisms that for a subset of genes, the
most important sequences that regulate expression are situated not in the promoter but …

Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence …

G Janbon, KL Ormerod, D Paulet, EJ Byrnes III… - PLoS …, 2014 - journals.plos.org
Cryptococcus neoformans is a pathogenic basidiomycetous yeast responsible for more than
600,000 deaths each year. It occurs as two serotypes (A and D) representing two varieties …

Introns protect eukaryotic genomes from transcription-associated genetic instability

A Bonnet, AR Grosso, A Elkaoutari, E Coleno, A Presle… - Molecular cell, 2017 - cell.com
Transcription is a source of genetic instability that can notably result from the formation of
genotoxic DNA: RNA hybrids, or R-loops, between the nascent mRNA and its template. Here …

Canonical poly (A) polymerase activity promotes the decay of a wide variety of mammalian nuclear RNAs

SM Bresson, OV Hunter, AC Hunter, NK Conrad - PLoS Genetics, 2015 - journals.plos.org
The human nuclear poly (A)-binding protein PABPN1 has been implicated in the decay of
nuclear noncoding RNAs (ncRNAs). In addition, PABPN1 promotes hyperadenylation by …

Viral evasion and manipulation of host RNA quality control pathways

JR Hogg - Journal of virology, 2016 - Am Soc Microbiol
Viruses have evolved diverse strategies to maximize the functional and coding capacities of
their genetic material. Individual viral RNAs are often used as substrates for both replication …

Short homology-directed repair using optimized Cas9 in the pathogen Cryptococcus neoformans enables rapid gene deletion and tagging

MY Huang, MB Joshi, MJ Boucher, S Lee, LC Loza… - Genetics, 2022 - academic.oup.com
Cryptococcus neoformans, the most common cause of fungal meningitis, is a basidiomycete
haploid budding yeast with a complete sexual cycle. Genome modification by homologous …

Alternative TSS use is widespread in Cryptococcus fungi in response to environmental cues and regulated genome-wide by the transcription factor Tur1

TTV Dang, C Maufrais, J Colin, F Moyrand… - Plos …, 2024 - journals.plos.org
Alternative transcription start site (TSS) usage regulation has been identified as a major
means of gene expression regulation in metazoans. However, in fungi, its impact remains …

Intron retention-dependent gene regulation in Cryptococcus neoformans

S Gonzalez-Hilarion, D Paulet, KT Lee, CC Hon… - Scientific reports, 2016 - nature.com
The biological impact of alternative splicing is poorly understood in fungi, although recent
studies have shown that these microorganisms are usually intron-rich. In this study, we re …

Quantitative global studies reveal differential translational control by start codon context across the fungal kingdom

EWJ Wallace, C Maufrais, J Sales-Lee… - Nucleic Acids …, 2020 - academic.oup.com
Eukaryotic protein synthesis generally initiates at a start codon defined by an AUG and its
surrounding Kozak sequence context, but the quantitative importance of this context in …