SLC transporters as therapeutic targets: emerging opportunities

L Lin, SW Yee, RB Kim, KM Giacomini - Nature reviews Drug discovery, 2015 - nature.com
Solute carrier (SLC) transporters—a family of more than 300 membrane-bound proteins that
facilitate the transport of a wide array of substrates across biological membranes—have …

A practical guide to environmental association analysis in landscape genomics

C Rellstab, F Gugerli, AJ Eckert, AM Hancock… - Molecular …, 2015 - Wiley Online Library
Landscape genomics is an emerging research field that aims to identify the environmental
factors that shape adaptive genetic variation and the gene variants that drive local …

A spectral approach integrating functional genomic annotations for coding and noncoding variants

I Ionita-Laza, K McCallum, B Xu, JD Buxbaum - Nature genetics, 2016 - nature.com
Over the past few years, substantial effort has been put into the functional annotation of
variation in human genome sequences. Such annotations can have a critical role in …

The genetic basis of Mendelian phenotypes: discoveries, challenges, and opportunities

JX Chong, KJ Buckingham, SN Jhangiani… - The American Journal of …, 2015 - cell.com
Discovering the genetic basis of a Mendelian phenotype establishes a causal link between
genotype and phenotype, making possible carrier and population screening and direct …

Rare-variant association analysis: study designs and statistical tests

S Lee, GR Abecasis, M Boehnke, X Lin - The American Journal of Human …, 2014 - cell.com
Despite the extensive discovery of trait-and disease-associated common variants, much of
the genetic contribution to complex traits remains unexplained. Rare variants can explain …

Using intron position conservation for homology-based gene prediction

J Keilwagen, M Wenk, JL Erickson… - Nucleic acids …, 2016 - academic.oup.com
Annotation of protein-coding genes is very important in bioinformatics and biology and has a
decisive influence on many downstream analyses. Homology-based gene prediction …

[HTML][HTML] Genetic diagnosis of developmental disorders in the DDD study: a scalable analysis of genome-wide research data

CF Wright, TW Fitzgerald, WD Jones, S Clayton… - The Lancet, 2015 - thelancet.com
Background Human genome sequencing has transformed our understanding of genomic
variation and its relevance to health and disease, and is now starting to enter clinical …

Common genetic variants contribute to risk of rare severe neurodevelopmental disorders

MEK Niemi, HC Martin, DL Rice, G Gallone, S Gordon… - Nature, 2018 - nature.com
There are thousands of rare human disorders that are caused by single deleterious, protein-
coding genetic variants. However, patients with the same genetic defect can have different …

Predicting functional effect of human missense mutations using PolyPhen‐2

I Adzhubei, DM Jordan… - Current protocols in …, 2013 - Wiley Online Library
Abstract PolyPhen‐2 (Polymorphism Phenotyping v2), available as software and via a Web
server, predicts the possible impact of amino acid substitutions on the stability and function …

Guidelines for investigating causality of sequence variants in human disease

DG MacArthur, TA Manolio, DP Dimmock, HL Rehm… - Nature, 2014 - nature.com
The discovery of rare genetic variants is accelerating, and clear guidelines for distinguishing
disease-causing sequence variants from the many potentially functional variants present in …