Machine intelligence in peptide therapeutics: A next‐generation tool for rapid disease screening

S Basith, B Manavalan, T Hwan Shin… - Medicinal research …, 2020 - Wiley Online Library
Discovery and development of biopeptides are time‐consuming, laborious, and dependent
on various factors. Data‐driven computational methods, especially machine learning (ML) …

Learning from protein structure with geometric vector perceptrons

B Jing, S Eismann, P Suriana… - International …, 2020 - openreview.net
Learning on 3D structures of large biomolecules is emerging as a distinct area in machine
learning, but there has yet to emerge a unifying network architecture that simultaneously …

Atom3d: Tasks on molecules in three dimensions

RJL Townshend, M Vögele, P Suriana, A Derry… - arXiv preprint arXiv …, 2020 - arxiv.org
Computational methods that operate on three-dimensional molecular structure have the
potential to solve important questions in biology and chemistry. In particular, deep neural …

A comprehensive survey of deep learning techniques in protein function prediction

R Dhanuka, JP Singh, A Tripathi - IEEE/ACM Transactions on …, 2023 - ieeexplore.ieee.org
Protein function prediction is a major challenge in the field of bioinformatics which aims at
predicting the functions performed by a known protein. Many protein data forms like protein …

Estimation of model accuracy in CASP13

J Cheng, MH Choe, A Elofsson, KS Han… - Proteins: Structure …, 2019 - Wiley Online Library
Methods to reliably estimate the accuracy of 3D models of proteins are both a fundamental
part of most protein folding pipelines and important for reliable identification of the best …

Survey of AI in cybersecurity for information technology management

L Chan, I Morgan, H Simon… - … IEEE technology & …, 2019 - ieeexplore.ieee.org
Cybersecurity has become an emerging challenge for business information management in
recent years. Artificial Intelligence (AI) is widely used in different field, but it is still relatively …

NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods

M Jiang, B Zhao, S Luo, Q Wang, Y Chu… - Briefings in …, 2021 - academic.oup.com
Neuropeptides acting as signaling molecules in the nervous system of various animals play
crucial roles in a wide range of physiological functions and hormone regulation behaviors …

A semi-supervised autoencoder-based approach for protein function prediction

R Dhanuka, A Tripathi, JP Singh - IEEE Journal of Biomedical …, 2022 - ieeexplore.ieee.org
After the development of next-generation sequencing techniques, protein sequences are
abundantly available. Determining the functional characteristics of these proteins is costly …

How can artificial intelligence be used for peptidomics?

L Perpetuo, J Klein, R Ferreira, S Guedes… - Expert Review of …, 2021 - Taylor & Francis
Introduction Peptidomics is an emerging field of omics sciences using advanced isolation,
analysis, and computational techniques that enable qualitative and quantitative analyses of …

Improved estimation of model quality using predicted inter-residue distance

L Ye, P Wu, Z Peng, J Gao, J Liu, J Yang - Bioinformatics, 2021 - academic.oup.com
Motivation Protein model quality assessment (QA) is an essential component in protein
structure prediction, which aims to estimate the quality of a structure model and/or select the …