Predictive biology: modelling, understanding and harnessing microbial complexity

AJ Lopatkin, JJ Collins - Nature Reviews Microbiology, 2020 - nature.com
Predictive biology is the next great chapter in synthetic and systems biology, particularly for
microorganisms. Tasks that once seemed infeasible are increasingly being realized such as …

Antimicrobial-induced horizontal transfer of antimicrobial resistance genes in bacteria: A mini-review

G Liu, LE Thomsen, JE Olsen - Journal of Antimicrobial …, 2022 - academic.oup.com
The emergence and spread of antimicrobial resistance (AMR) among pathogenic bacteria
constitute an accelerating crisis for public health. The selective pressures caused by …

[HTML][HTML] Augmented dissemination of antibiotic resistance elicited by non-antibiotic factors

S Zhu, B Yang, Z Wang, Y Liu - Ecotoxicology and Environmental Safety, 2023 - Elsevier
The emergence and rapid spread of antibiotic resistance seriously compromise the clinical
efficacy of current antibiotic therapies, representing a serious public health threat worldwide …

Link between antibiotic persistence and antibiotic resistance in bacterial pathogens

W Eisenreich, T Rudel, J Heesemann… - Frontiers in cellular and …, 2022 - frontiersin.org
Both, antibiotic persistence and antibiotic resistance characterize phenotypes of survival in
which a bacterial cell becomes insensitive to one (or even) more antibiotic (s). However, the …

Temperature and Nutrient Limitations Decrease Transfer of Conjugative IncP-1 Plasmid pKJK5 to Wild Escherichia coli Strains

R Pallares-Vega, G Macedo, MSM Brouwer… - Frontiers in …, 2021 - frontiersin.org
Plasmid-mediated dissemination of antibiotic resistance among fecal Enterobacteriaceae in
natural ecosystems may contribute to the persistence of antibiotic resistance genes in …

Climate warming, environmental degradation and pollution as drivers of antibiotic resistance

P Rzymski, W Gwenzi, B Poniedziałek, S Mangul… - Environmental …, 2024 - Elsevier
Antibiotic resistance is a major challenge to public health, but human-caused environmental
changes have not been widely recognized as its drivers. Here, we provide a comprehensive …

Modelling environmental antibiotic-resistance gene abundance: A meta-analysis

DJ Duarte, R Oldenkamp, AMJ Ragas - Science of the Total Environment, 2019 - Elsevier
The successful treatment of infectious diseases heavily relies on the therapeutic usage of
antibiotics. However, the high use of antibiotics in humans and animals leads to increasing …

The role of water matrix on antibiotic resistance genes transmission in substrate layer from stormwater bioretention cells

XJ Zuo, SH Zhang, SJ Chen - Water Research, 2024 - Elsevier
Recently, extensive attention has been paid to antibiotic resistance genes (ARGs)
transmission. However, little available literature could be found about ARGs transmission in …

Quantitative analysis of horizontal gene transfer in complex systems

J Moralez, K Szenkiel, K Hamilton, A Pruden… - Current Opinion in …, 2021 - Elsevier
Highlights•Microbial HGT is a complex process influenced by a variety of modulating factors,
including cellular genetics and environmental conditions.•HGT dynamics are governed by …

[HTML][HTML] Simultaneous estimation of parameters governing the vertical and horizontal transfer of antibiotic resistance genes

S Mishra, U Klümper, V Voolaid, TU Berendonk… - Science of the Total …, 2021 - Elsevier
The accelerated spread of antibiotic resistance genes (ARG) in the environment occurs
mainly through plasmid transfer facilitated via bacterial conjugation. To predict and efficiently …