Gut microbiome–brain alliance: a landscape view into mental and gastrointestinal health and disorders
Gut microbiota includes a vast collection of microorganisms residing within the
gastrointestinal tract. It is broadly recognized that the gut and brain are in constant …
gastrointestinal tract. It is broadly recognized that the gut and brain are in constant …
Greengenes2 unifies microbial data in a single reference tree
Studies using 16S rRNA and shotgun metagenomics typically yield different results, usually
attributed to PCR amplification biases. We introduce Greengenes2, a reference tree that …
attributed to PCR amplification biases. We introduce Greengenes2, a reference tree that …
Patterns in soil microbial diversity across Europe
Factors driving microbial community composition and diversity are well established but the
relationship with microbial functioning is poorly understood, especially at large scales. We …
relationship with microbial functioning is poorly understood, especially at large scales. We …
Contributions of the early-life microbiome to childhood atopy and asthma development
H Steininger, J Moltzau-Anderson, SV Lynch - Seminars in immunology, 2023 - Elsevier
The rapid rise in atopy and asthma in industrialized nations has led to the identification of
early life environmental factors that promote these conditions and spurred research into how …
early life environmental factors that promote these conditions and spurred research into how …
Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data
Sequencing-based approaches for the analysis of microbial communities are susceptible to
contamination, which could mask biological signals or generate artifactual ones. Methods for …
contamination, which could mask biological signals or generate artifactual ones. Methods for …
Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments
AB Chase, A Bogdanov, AM Demko… - The ISME …, 2023 - academic.oup.com
While the field of microbial biogeography has largely focused on the contributions of abiotic
factors to community patterns, the potential influence of biotic interactions in structuring …
factors to community patterns, the potential influence of biotic interactions in structuring …
Inter-kingdom interactions and stability of methanogens revealed by machine-learning guided multi-omics analysis of industrial-scale biogas plants
Multi-omics analysis is a powerful tool for the detection and study of inter-kingdom
interactions, such as those between bacterial and archaeal members of complex biogas …
interactions, such as those between bacterial and archaeal members of complex biogas …
Quantifying stochastic processes in shaping dissolved organic matter pool with high-resolution mass spectrometry
Z She, J Wang, S Wang, C He, Z Jiang… - Environmental …, 2023 - ACS Publications
Natural dissolved organic matter (DOM) represents a ubiquitous molecular mixture,
progressively characterized by spatiotemporal resolution. However, an inadequate …
progressively characterized by spatiotemporal resolution. However, an inadequate …
Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products
Covering: 1995 to 2023Advances in bioanalytical methods, particularly mass spectrometry,
have provided valuable molecular insights into the mechanisms of life. Non-targeted …
have provided valuable molecular insights into the mechanisms of life. Non-targeted …
[HTML][HTML] Soil metabolomics-current challenges and future perspectives
Soil is an extremely complex and dynamic matrix, in part, due to the wide diversity of
organisms living within it. Soil organic matter (SOM) is the fundamental substrate on which …
organisms living within it. Soil organic matter (SOM) is the fundamental substrate on which …