Complete chloroplast genome structural characterization of two Phalaenopsis (Orchidaceae) species and comparative analysis with their alliance

L Tao, H Duan, K Tao, Y Luo, Q Li, L Li - BMC genomics, 2023 - Springer
Background The taxonomy and infrageneric delimitation of Phalaenopsis Blume has been
significantly disputed due to some overlapping morphological features between species …

Plastid genome assembly using long‐read data

W Zhou, CE Armijos, C Lee, R Lu… - Molecular ecology …, 2023 - Wiley Online Library
Although plastid genome (plastome) structure is highly conserved across most seed plants,
investigations during the past two decades have revealed several disparately related …

Comparative and phylogenetic analysis of the complete chloroplast genomes of Uncaria (Rubiaceae) species

J Dai, Q Liu, X Xu, Z Tan, Y Lin, X Gao… - Frontiers in Plant …, 2023 - frontiersin.org
The genus Uncaria is famous for its high medicinal value. However, the high morphological
similarities and unclear interspecific genetic relationships have posed challenges to the …

A new perspective on codon usage, selective pressure, and phylogenetic implications of the plastomes in the Telephium clade (Crassulaceae)

J Yang, Y Ye, R Yi, D Bi, S Zhang, S Han, X Kan - Gene, 2024 - Elsevier
The Telephium clade of the Crassulaceae family contains many medicinal, ornamental, and
ecologically restorative plants. However, the phylogenetic relationships within the clade …

Complete chloroplast genome molecular structure, comparative and phylogenetic analyses of Sphaeropteris lepifera of Cyatheaceae family: a tree fern from China

Q Hu, R Qian, Y Zhang, X Ma, Y Ye, X Zhang, L Lin… - Scientific Reports, 2023 - nature.com
Sphaeropteris lepifera is a tree fern in the Cyatheaceae, a family that has played an
important role in the evolution of plant systems. This study aimed to analyze the complete …

The Complete Chloroplast Genome of Endangered Species Stemona parviflora: Insight into the Phylogenetic Relationship and Conservation Implications

R Wei, Q Li - Genes, 2022 - mdpi.com
Stemona parviflora is an endangered species, narrowly endemic to Hainan and Southwest
Guangdong. The taxonomic classification of S. parviflora remains controversial. Moreover …

Complete chloroplast genome sequence of Camellia sinensis: genome structure, adaptive evolution, and phylogenetic relationships

Z Chen, Q Liu, Y Xiao, G Zhou, P Yu, J Bai… - Journal of Applied …, 2023 - Springer
The chloroplast (cp) genome holds immense potential for a variety of applications including
species identification, phylogenetic analysis, and evolutionary studies. In this study, we …

[HTML][HTML] Codon usage bias in the chloroplast genomes of Cymbidium species in Guizhou, China

A Rao, Z Chen, D Wu, Y Wang, N Hou - South African Journal of Botany, 2024 - Elsevier
Cymbidium plants play a vital role in biodiversity conservation, evolutionary research, and
biological protection. Understanding codon usage bias (CUB) in Cymbidium plants is crucial …

Comparative analysis and characterization of the chloroplast genome of Krascheninnikovia ceratoides (Amarathaceae): a xerophytic semi-shrub exhibiting drought …

Y Liu, C Zheng, X Su, J Chen, X Li, C Sun… - BMC Genomic …, 2024 - Springer
Background Krascheninnikovia ceratoides, a perennial halophytic semi-shrub belonging to
the genus Krascheninnikovia (Amarathaceae), possesses noteworthy ecological, nutritional …

Complete chloroplast genome structural characterization of two Aerides (Orchidaceae) species with a focus on phylogenetic position of Aerides flabellata

K Tao, L Tao, J Huang, H Duan, Y Luo, L Li - BMC genomics, 2024 - Springer
Background The disputed phylogenetic position of Aerides flabellata Rolfe ex Downie, due
to morphological overlaps with related species, was investigated based on evidence of …