Network‐based prediction of protein function
Functional annotation of proteins is a fundamental problem in the post‐genomic era. The
recent availability of protein interaction networks for many model species has spurred on the …
recent availability of protein interaction networks for many model species has spurred on the …
[HTML][HTML] Identification and validation of oncogenes in liver cancer using an integrative oncogenomic approach
The heterogeneity and instability of human tumors hamper straightforward identification of
cancer-causing mutations through genomic approaches alone. Herein we describe a mouse …
cancer-causing mutations through genomic approaches alone. Herein we describe a mouse …
From 'differential expression'to 'differential networking'–identification of dysfunctional regulatory networks in diseases
A de la Fuente - Trends in genetics, 2010 - cell.com
Understanding diseases requires identifying the differences between healthy and affected
tissues. Gene expression data have revolutionized the study of diseases by making it …
tissues. Gene expression data have revolutionized the study of diseases by making it …
Decoding global gene expression programs in liver cancer by noninvasive imaging
Paralleling the diversity of genetic and protein activities, pathologic human tissues also
exhibit diverse radiographic features. Here we show that dynamic imaging traits in non …
exhibit diverse radiographic features. Here we show that dynamic imaging traits in non …
[HTML][HTML] A modular analysis framework for blood genomics studies: application to systemic lupus erythematosus
D Chaussabel, C Quinn, J Shen, P Patel, C Glaser… - Immunity, 2008 - cell.com
The analysis of patient blood transcriptional profiles offers a means to investigate the
immunological mechanisms relevant to human diseases on a genome-wide scale. In …
immunological mechanisms relevant to human diseases on a genome-wide scale. In …
[HTML][HTML] MMP1 and MMP7 as potential peripheral blood biomarkers in idiopathic pulmonary fibrosis
Background Idiopathic pulmonary fibrosis (IPF) is a chronic progressive fibrotic lung disease
associated with substantial morbidity and mortality. The objective of this study was to …
associated with substantial morbidity and mortality. The objective of this study was to …
Motif module map reveals enforcement of aging by continual NF-κB activity
Aging is characterized by specific alterations in gene expression, but their underlying
mechanisms and functional consequences are not well understood. Here we develop a …
mechanisms and functional consequences are not well understood. Here we develop a …
Genomics and signaling pathways in hepatocellular carcinoma
Hepatocellular carcinoma (HCC) is a leading cause of death among cirrhotic patients and
has become a major health problem in developed countries. There is an elemental …
has become a major health problem in developed countries. There is an elemental …
Natural history and evolutionary principles of gene duplication in fungi
Gene duplication and loss is a powerful source of functional innovation. However, the
general principles that govern this process are still largely unknown. With the growing …
general principles that govern this process are still largely unknown. With the growing …
Radiogenomics: creating a link between molecular diagnostics and diagnostic imaging
AM Rutman, MD Kuo - European journal of radiology, 2009 - Elsevier
Studies employing high-throughput biological techniques have recently contributed to an
improved characterization of human cancers, allowing for novel sub-classification, better …
improved characterization of human cancers, allowing for novel sub-classification, better …