Proksee: in-depth characterization and visualization of bacterial genomes
JR Grant, E Enns, E Marinier, A Mandal… - Nucleic acids …, 2023 - academic.oup.com
Abstract Proksee (https://proksee. ca) provides users with a powerful, easy-to-use, and
feature-rich system for assembling, annotating, analysing, and visualizing bacterial …
feature-rich system for assembling, annotating, analysing, and visualizing bacterial …
Emerging tools and best practices for studying gut microbial community metabolism
C Noecker, PJ Turnbaugh - Nature Metabolism, 2024 - nature.com
The human gut microbiome vastly extends the set of metabolic reactions catalysed by our
own cells, with far-reaching consequences for host health and disease. However, our …
own cells, with far-reaching consequences for host health and disease. However, our …
[HTML][HTML] Host genetic regulation of human gut microbial structural variation
Although the impact of host genetics on gut microbial diversity and the abundance of specific
taxa is well established,,,,–, little is known about how host genetics regulates the genetic …
taxa is well established,,,,–, little is known about how host genetics regulates the genetic …
Multiclonal human origin and global expansion of an endemic bacterial pathogen of livestock
Most new pathogens of humans and animals arise via switching events from distinct host
species. However, our understanding of the evolutionary and ecological drivers of …
species. However, our understanding of the evolutionary and ecological drivers of …
Longitudinal multi-omics analysis of host microbiome architecture and immune responses during short-term spaceflight
Maintenance of astronaut health during spaceflight will require monitoring and potentially
modulating their microbiomes. However, documenting microbial shifts during spaceflight has …
modulating their microbiomes. However, documenting microbial shifts during spaceflight has …
Challenges in prokaryote pangenomics
Horizontal gene transfer (HGT) and the resulting patterns of gene gain and loss are a
fundamental part of bacterial evolution. Investigating these patterns can help us to …
fundamental part of bacterial evolution. Investigating these patterns can help us to …
Syntrophic entanglements for propionate and acetate oxidation under thermophilic and high-ammonia conditions
Propionate is a key intermediate in anaerobic digestion processes and often accumulates in
association with perturbations, such as elevated levels of ammonia. Under such conditions …
association with perturbations, such as elevated levels of ammonia. Under such conditions …
H3K9me selectively blocks transcription factor activity and ensures differentiated tissue integrity
SP Methot, J Padeken, G Brancati, P Zeller… - Nature cell …, 2021 - nature.com
The developmental role of histone H3K9 methylation (H3K9me), which typifies
heterochromatin, remains unclear. In Caenorhabditis elegans, loss of H3K9me leads to a …
heterochromatin, remains unclear. In Caenorhabditis elegans, loss of H3K9me leads to a …
Plassembler: an automated bacterial plasmid assembly tool
With recent advances in sequencing technologies, it is now possible to obtain near-perfect
complete bacterial chromosome assemblies cheaply and efficiently by combining a long …
complete bacterial chromosome assemblies cheaply and efficiently by combining a long …
Enhanced bacterium–phage symbiosis in attached microbial aggregates on a membrane surface facing elevated hydraulic stress
Phages are increasingly recognized for their importance in microbial aggregates, including
their influence on microbial ecosystem services and biotechnology applications. However …
their influence on microbial ecosystem services and biotechnology applications. However …