[HTML][HTML] Synthetic microbial communities: A gateway to understanding resistance, resilience, and functionality in spontaneously fermented food microbiomes

O Nikoloudaki, F Aheto, R Di Cagno… - Food Research …, 2024 - Elsevier
This review delves into the intricate traits of microbial communities encountered in
spontaneously fermented foods (SFF), contributing to resistance, resilience, and functionality …

[HTML][HTML] A review of advances in integrating gene regulatory networks and metabolic networks for designing strain optimization

R Ananda, KM Daud, S Zainudin - … of King Saud University-Computer and …, 2024 - Elsevier
Strain optimization aims to overproduce valuable metabolites by leveraging an
understanding of biological systems, including metabolic networks and gene regulatory …

Systematic elucidation of independently modulated genes in Lactiplantibacillus plantarum reveals a trade‐off between secondary and primary metabolism

S Qiu, Y Huang, S Liang, H Zeng… - Microbial …, 2024 - Wiley Online Library
Lactiplantibacillus plantarum is a probiotic bacterium widely used in food and health
industries, but its gene regulatory information is limited in existing databases, which …

[HTML][HTML] neo4jsbml: import systems biology markup language data into the graph database Neo4j

G Gricourt, T Duigou, S Dérozier, JL Faulon - PeerJ, 2024 - peerj.com
Abstract Systems Biology Markup Language (SBML) has emerged as a standard for
representing biological models, facilitating model sharing and interoperability. It stores many …

Proteome trade-off between primary and secondary metabolism shapes acid stress induced bacterial exopolysaccharide production

S Qiu, A Yang, X Yang, W Li, H Zeng, Y Wang - bioRxiv, 2024 - biorxiv.org
The exopolysaccharide (EPS) produced by Lactiplantibacillus plantarum is a high-value
bioproduct in food and health industries, and its biosynthesis has been found as a …