The intrinsic stabilities and structures of alkali metal cationized guanine quadruplexes

M Azargun, Y Jami-Alahmadi… - Physical Chemistry …, 2017 - pubs.rsc.org
The structures and stabilities of self-assembled guanine quadruplexes, M (9eG) 8+(M= Na,
K, Rb, Cs; 9eG= 9-ethylguanine), have been studied in the gas phase by blackbody infrared …

A nicked duplex decamer DNA with a PEG6 tether

L Kozerski, AP Mazurek, R Kawecki… - Nucleic Acids …, 2001 - academic.oup.com
A dumbbell double-stranded DNA decamer tethered with a hexaethylene glycol linker
moiety (DDSDPEG), with a nick in the centre of one strand, has been synthesised. The …

Interactions of hydrated divalent metal cations with nucleic acid bases. How to relate the gas phase data to solution situation and binding selectivity in nucleic acids

JE Šponer, V Sychrovský, P Hobza… - Physical Chemistry …, 2004 - pubs.rsc.org
Binding modes of hydrated Zn2+ and Mg2+ cations to the N7 and O6 positions of guanine
have been characterized by state-of-the-art ab initio model calculations. We show how …

[HTML][HTML] On the binding of Mg2+, Ca2+, Zn2+ and Cu+ metal cations to 2′-deoxyguanosine: changes on sugar puckering and strength of the N-glycosidic bond

MS Ahmadi, A Fattahi - Scientia Iranica, 2011 - Elsevier
Abstract The binding of Mg 2+, Ca 2+, Zn 2+ and Cu+ metal cations to 2′-deoxyguanosine
has been analyzed, using the hybrid B3LYP, Density Functional Theory (DFT) method and 6 …

Proton affinity and gas-phase basicity of urea

F Wang, S Ma, D Zhang, RG Cooks - The Journal of Physical …, 1998 - ACS Publications
Urea undergoes O-protonation in the gas phase to yield a product that is thermodynamically
more stable than the N-protonated isomer, as also is the case in aqueous solution. The …

Role of Cu+ Association on the Formamide → Formamidic Acid → (Aminohydroxy)carbene Isomerizations in the Gas Phase

A Luna, JP Morizur, J Tortajada, M Alcami… - The Journal of …, 1998 - ACS Publications
The structures, relative stabilities, and bonding characteristics of complexes of formamide,
formamidic acid, and (aminohydroxy) carbene with Cu+ have been investigated through the …

Evaluation of the protonation thermochemistry obtained by the extended kinetic method

G Bouchoux - Journal of mass spectrometry, 2006 - Wiley Online Library
An evaluation of the results obtained by the extended kinetic method for a series of
representative bases is presented here. Analysis of the original experimental data is …

Do Anionic Gold Clusters Modify Conventional Hydrogen Bonds? The Interaction of Anionic Aun (n = 2−4) with the Adenine−Uracil Base Pair

A Martinez - The Journal of Physical Chemistry A, 2009 - ACS Publications
Density functional approximation (B3LYP) calculations have been used in order to analyze
the interaction of gold anionic clusters (Au n with n= 2− 4) with uracil ([uracil-Au n]− 1) …

Alkali metal cation binding affinities of cytosine in the gas phase: revisited

B Yang, MT Rodgers - Physical Chemistry Chemical Physics, 2014 - pubs.rsc.org
Binding of metal cations to the nucleobases can influence base pairing, base stacking and
nucleobase tautomerism. Gas-phase condensation of dc discharge generated alkali metal …

Can an amine be a stronger acid than a carboxylic acid? The surprisingly high acidity of amine–borane complexes

A Martín‐Sómer, AM Lamsabhi… - … A European Journal, 2012 - Wiley Online Library
The gas‐phase acidity of a series of amine–borane complexes has been investigated
through the use of electrospray mass spectrometry (ESI‐MS), with the application of the …