The evolutionary significance of polyploidy

Y Van de Peer, E Mizrachi, K Marchal - Nature Reviews Genetics, 2017 - nature.com
Polyploidy, or the duplication of entire genomes, has been observed in prokaryotic and
eukaryotic organisms, and in somatic and germ cells. The consequences of polyploidization …

Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …

Phylogenomic Relationships of Diploids and the Origins of Allotetraploids in Dactylorhiza (Orchidaceae)

MK Brandrud, J Baar, MT Lorenzo… - Systematic …, 2020 - academic.oup.com
Disentangling phylogenetic relationships proves challenging for groups that have evolved
recently, especially if there is ongoing reticulation. Although they are in most cases …

Evolution and diversity of the cotton genome

G Hu, CE Grover, J Jareczek, D Yuan, Y Dong… - Cotton precision …, 2021 - Springer
We present an overview of Gossypium genome evolution and the implications of this
understanding for targeted breeding objectives. The cotton genus (Gossypium) contains …

[HTML][HTML] Fiber quality improvement in upland cotton (Gossypium hirsutum L.): quantitative trait loci mapping and marker assisted selection application

B Ijaz, N Zhao, J Kong, J Hua - Frontiers in plant science, 2019 - frontiersin.org
Genetic improvement in fiber quality is one of the main challenges for cotton breeders. Fiber
quality traits are controlled by multiple genes and are classified as complex quantitative …

Polyploidy and the proteome

DE Soltis, BB Misra, S Shan, S Chen… - Biochimica et Biophysica …, 2016 - Elsevier
Although major advances have been made during the past 20 years in our understanding of
the genetic and genomic consequences of polyploidy, our knowledge of polyploidy and the …

Next-generation transcriptome assembly and analysis: Impact of ploidy

A Voshall, EN Moriyama - Methods, 2020 - Elsevier
Whole genome duplications (WGD) occur widely in plants, but the effects of these events
impact all branches of life. WGD events have major evolutionary impacts, often leading to …

Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids

G Hu, CE Grover, MA Arick, M Liu… - Briefings in …, 2021 - academic.oup.com
Polyploidy is a widespread phenomenon throughout eukaryotes. Due to the coexistence of
duplicated genomes, polyploids offer unique challenges for estimating gene expression …

[HTML][HTML] Expression partitioning of duplicate genes at single cell resolution in Arabidopsis roots

JE Coate, AD Farmer, JW Schiefelbein… - Frontiers in …, 2020 - frontiersin.org
Gene duplication is a key evolutionary phenomenon, prevalent in all organisms but
particularly so in plants, where whole genome duplication (WGD; polyploidy) is a major force …

Differential interferon system gene expression profiles in susceptible and resistant gynogenetic clones of gibel carp challenged with herpesvirus CaHV

CY Mou, Y Wang, QY Zhang, FX Gao, Z Li… - Developmental & …, 2018 - Elsevier
Interferon (IFN) system plays a vital role in the first line of defense against viruses. In this
study, we first identified multiple transcripts of 15 IFN system genes, including PRRs (TLR2 …