Evolutionary dynamics of chromatin structure and duplicate gene expression in diploid and allopolyploid cotton

G Hu, CE Grover, DL Vera, PY Lung… - Molecular Biology …, 2024 - academic.oup.com
Polyploidy is a prominent mechanism of plant speciation and adaptation, yet the mechanistic
understandings of duplicated gene regulation remain elusive. Chromatin structure dynamics …

[HTML][HTML] Asymmetric evolution and expansion of the NAC transcription factor in polyploidized cotton

K Fan, F Li, J Chen, Z Li, W Lin, S Cai, J Liu… - Frontiers in plant …, 2018 - frontiersin.org
Polyploidy in Gossypium hirsutum conferred different properties from its diploid ancestors
under the regulation of transcription factors. The NAC transcription factor is a plant-specific …

Differential interferon system gene expression profiles in susceptible and resistant gynogenetic clones of gibel carp challenged with herpesvirus CaHV

CY Mou, Y Wang, QY Zhang, FX Gao, Z Li… - Developmental & …, 2018 - Elsevier
Interferon (IFN) system plays a vital role in the first line of defense against viruses. In this
study, we first identified multiple transcripts of 15 IFN system genes, including PRRs (TLR2 …

Insights into the ecology and evolution of polyploid plants through network analysis

JP Gallagher, CE Grover, G Hu, JF Wendel - Molecular ecology, 2016 - Wiley Online Library
Polyploidy is a widespread phenomenon throughout eukaryotes, with important ecological
and evolutionary consequences. Although genes operate as components of complex …

Genome-wide identification and characterization of phospholipase C gene family in cotton (Gossypium spp.)

B Zhang, Y Wang, JY Liu - Science China Life Sciences, 2018 - Springer
Phospholipase C (PLC) are important regulatory enzymes involved in several lipid and Ca
2+-dependent signaling pathways. Previous studies have elucidated the versatile roles of …

Expression patterns and functional divergence of homologous genes accompanied by polyploidization in cotton (Gossypium hirsutum L.)

Z Peng, H Cheng, G Sun, Z Pan, X Wang… - Science China Life …, 2020 - Springer
Naturally allotetraploid cotton has been widely used as an ideal model to investigate gene
expression remodeling as a consequence of polyploidization. However, the global gene …

Segmental allotetraploidy generates extensive homoeologous expression rewiring and phenotypic diversity at the population level in rice

Y Sun, Y Wu, C Yang, S Sun, X Lin, L Liu… - Molecular …, 2017 - Wiley Online Library
Allopolyploidization, that is, concomitant merging and doubling of two or more divergent
genomes in a common nucleus/cytoplasm, is known to instantly alter genomewide …

Whole genome incorporation and epigenetic stability in a newly synthetic allopolyploid of gynogenetic gibel carp

GM Shao, XY Li, Y Wang, ZW Wang, Z Li… - Genome biology and …, 2018 - academic.oup.com
Allopolyploidization plays an important role in speciation, and some natural or synthetic
allopolyploid fishes have been extensively applied to aquaculture. Although genetic and …

Transgressive and subgenome expression level dominance and co-expression network analyses at the early fiber development in allopolyploid Gossypium

A Xing, X Zhang, J Wang, S He, MF Nazir… - Industrial Crops and …, 2024 - Elsevier
Polyploidization can lead to the emergence of new species. Allotetraploid cotton arose
through hybridization and whole genome duplication of its diploid A and D genome …

Does one subgenome become dominant in the formation and evolution of a polyploid?

C Liu, YG Wang - Annals of Botany, 2023 - academic.oup.com
Background Polyploids are common in flowering plants and they tend to have more
expanded ranges of distributions than their diploid progenitors. Possible mechanisms …