Copy number variation in domestication

ZN Lye, MD Purugganan - Trends in Plant Science, 2019 - cell.com
Domesticated plants have long served as excellent models for studying evolution. Many
genes and mutations underlying important domestication traits have been identified, and …

An evolving view of copy number variants

S Lauer, D Gresham - Current genetics, 2019 - Springer
Copy number variants (CNVs) are regions of the genome that vary in integer copy number.
CNVs, which comprise both amplifications and deletions of DNA sequence, have been …

Copy number variants outperform SNPs to reveal genotype–temperature association in a marine species

Y Dorant, H Cayuela, K Wellband, M Laporte… - Molecular …, 2020 - Wiley Online Library
Copy number variants (CNVs) are a major component of genotypic and phenotypic variation
in genomes. To date, our knowledge of genotypic variation and evolution has largely been …

Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics

G Avecilla, JN Chuong, F Li, G Sherlock… - PLoS …, 2022 - journals.plos.org
The rate of adaptive evolution depends on the rate at which beneficial mutations are
introduced into a population and the fitness effects of those mutations. The rate of beneficial …

Structural variants in the soybean genome localize to clusters of biotic stress-response genes

LK McHale, WJ Haun, WW Xu, PB Bhaskar… - Plant …, 2012 - academic.oup.com
Genome-wide structural and gene content variations are hypothesized to drive important
phenotypic variation within a species. Structural and gene content variations were assessed …

Goat domestication and breeding: a jigsaw of historical, biological and molecular data with missing pieces

M Amills, J Capote, G Tosser‐Klopp - Animal genetics, 2017 - Wiley Online Library
Domestic goats (Capra hircus) are spread across the five continents with a census of 1
billion individuals. The worldwide population of goats descends from a limited number of …

Single-cell copy number variant detection reveals the dynamics and diversity of adaptation

S Lauer, G Avecilla, P Spealman, G Sethia… - PLoS …, 2018 - journals.plos.org
Copy number variants (CNVs) are a pervasive source of genetic variation and evolutionary
potential, but the dynamics and diversity of CNVs within evolving populations remain …

Genome-wide detection of CNVs and their association with performance traits in broilers

AC Fernandes, VH da Silva, CP Goes, GCM Moreira… - BMC genomics, 2021 - Springer
Abstract Background Copy number variations (CNVs) are a major type of structural genomic
variants that underlie genetic architecture and phenotypic variation of complex traits, not …

Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins

L Jiang, J Jiang, J Yang, X Liu, J Wang, H Wang… - BMC genomics, 2013 - Springer
Abstract Background Copy number variations (CNVs) are widespread in the human or
animal genome and are a significant source of genetic variation, which has been …

Chromosome aberrations and fertility disorders in domestic animals

T Raudsepp, BP Chowdhary - Annual Review of Animal …, 2016 - annualreviews.org
The association between chromosomal abnormalities and reduced fertility in domestic
animals is well recorded and has been studied for decades. Chromosome aberrations …