Microtechnologies for single-cell and spatial multi-omics

Y Deng, Z Bai, R Fan - Nature Reviews Bioengineering, 2023 - nature.com
Single-cell omics assays allow the identification of the type, subtype and functional state of a
single cell. To put such single-cell data in the context of tissues, spatially resolved omics can …

[HTML][HTML] Advances in single-cell omics and multiomics for high-resolution molecular profiling

J Lim, C Park, M Kim, H Kim, J Kim… - Experimental & Molecular …, 2024 - nature.com
Single-cell omics technologies have revolutionized molecular profiling by providing high-
resolution insights into cellular heterogeneity and complexity. Traditional bulk omics …

[HTML][HTML] Single-cell multi-omics and lineage tracing to dissect cell fate decision-making

L Haghverdi, LS Ludwig - Stem Cell Reports, 2023 - cell.com
The concept of cell fate relates to the future identity of a cell, and its daughters, which is
obtained via cell differentiation and division. Understanding, predicting, and manipulating …

[HTML][HTML] Single-cell profiling of transcriptome and histone modifications with EpiDamID

FJ Rang, KL de Luca, SS de Vries, C Valdes-Quezada… - Molecular Cell, 2022 - cell.com
Recent advances in single-cell sequencing technologies have enabled simultaneous
measurement of multiple cellular modalities, but the combined detection of histone post …

Quantifying common and distinct information in single-cell multimodal data with Tilted Canonical Correlation Analysis

KZ Lin, NR Zhang - … of the National Academy of Sciences, 2023 - National Acad Sciences
Multimodal single-cell technologies profile multiple modalities for each cell simultaneously,
enabling a more thorough characterization of cell populations. Existing dimension-reduction …

[HTML][HTML] Profiling chromatin regulatory landscape: insights into the development of ChIP-seq and ATAC-seq

S Ma, Y Zhang - Molecular biomedicine, 2020 - Springer
Chromatin regulatory landscape plays a critical role in many disease processes and embryo
development. Epigenome sequencing technologies such as chromatin immunoprecipitation …

Mapping cells through time and space with moscot

D Klein, G Palla, M Lange, M Klein, Z Piran, M Gander… - bioRxiv, 2023 - biorxiv.org
Single-cell genomics technologies enable multimodal profiling of millions of cells across
temporal and spatial dimensions. Experimental limitations prevent the measurement of all …

[HTML][HTML] Tracking cell-type-specific temporal dynamics in human and mouse brains

Z Lu, M Zhang, J Lee, A Sziraki, S Anderson, Z Zhang… - Cell, 2023 - cell.com
Progenitor cells are critical in preserving organismal homeostasis, yet their diversity and
dynamics in the aged brain remain underexplored. We introduced TrackerSci, a single-cell …

Parallel bimodal single-cell sequencing of transcriptome and chromatin accessibility

QR Xing, CA El Farran, YY Zeng, Y Yi… - Genome …, 2020 - genome.cshlp.org
Joint profiling of transcriptome and chromatin accessibility within single cells allows for the
deconstruction of the complex relationship between transcriptional states and upstream …

[HTML][HTML] Single-cell multiomics decodes regulatory programs for mouse secondary palate development

F Yan, A Suzuki, C Iwaya, G Pei, X Chen… - Nature …, 2024 - nature.com
Perturbations in gene regulation during palatogenesis can lead to cleft palate, which is
among the most common congenital birth defects. Here, we perform single-cell multiome …