KaKs_Calculator 3.0: calculating selective pressure on coding and non-coding sequences

Z Zhang - Genomics, Proteomics and Bioinformatics, 2022 - academic.oup.com
Abstract KaKs_Calculator 3.0 is an updated toolkit that is capable of calculating selective
pressure on both coding and non-coding sequences. Similar to the nonsynonymous …

Database resources of the national genomics data center, China national center for bioinformation in 2023

Nucleic acids research, 2023 - academic.oup.com
Abstract The National Genomics Data Center (NGDC), part of the China National Center for
Bioinformation (CNCB), provides a family of database resources to support global academic …

Integrating omics databases for enhanced crop breeding

H Chao, S Zhang, Y Hu, Q Ni, S Xin, L Zhao… - Journal of Integrative …, 2024 - degruyter.com
Crop plant breeding involves selecting and developing new plant varieties with desirable
traits such as increased yield, improved disease resistance, and enhanced nutritional value …

Gut microbiota alters host bile acid metabolism to contribute to intrahepatic cholestasis of pregnancy

B Tang, L Tang, S Li, S Liu, J He, P Li, S Wang… - Nature …, 2023 - nature.com
Intrahepatic cholestasis of pregnancy (ICP) is a female pregnancy-specific disorder that is
characterized by increased serum bile acid and adverse fetal outcomes. The aetiology and …

LncBook 2.0: integrating human long non-coding RNAs with multi-omics annotations

Z Li, L Liu, C Feng, Y Qin, J Xiao… - Nucleic Acids …, 2023 - academic.oup.com
LncBook, a comprehensive resource of human long non-coding RNAs (lncRNAs), has been
used in a wide range of lncRNA studies across various biological contexts. Here, we present …

The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …

Stressed target cancer cells drive nongenetic reprogramming of CAR T cells and solid tumor microenvironment

Y Wang, DL Drum, R Sun, Y Zhang, F Chen… - Nature …, 2023 - nature.com
The poor efficacy of chimeric antigen receptor T-cell therapy (CAR T) for solid tumors is due
to insufficient CAR T cell tumor infiltration, in vivo expansion, persistence, and effector …

[HTML][HTML] Antagonistic RALF peptides control an intergeneric hybridization barrier on Brassicaceae stigmas

Z Lan, Z Song, Z Wang, L Li, Y Liu, S Zhi, R Wang… - Cell, 2023 - cell.com
Pollen-pistil interactions establish interspecific/intergeneric pre-zygotic hybridization barriers
in plants. The rejection of undesired pollen at the stigma is crucial to avoid outcrossing but …

Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax

ZH Wang, XF Wang, T Lu, MR Li, P Jiang… - Nature …, 2022 - nature.com
All extant core-eudicot plants share a common ancestral genome that has experienced
cyclic polyploidizations and (re) diploidizations. Reshuffling of the ancestral core-eudicot …

Single cell multi-omics reveal intra-cell-line heterogeneity across human cancer cell lines

Q Zhu, X Zhao, Y Zhang, Y Li, S Liu, J Han… - Nature …, 2023 - nature.com
Human cancer cell lines have long served as tools for cancer research and drug discovery,
but the presence and the source of intra-cell-line heterogeneity remain elusive. Here, we …