Torsional diffusion for molecular conformer generation
Molecular conformer generation is a fundamental task in computational chemistry. Several
machine learning approaches have been developed, but none have outperformed state-of …
machine learning approaches have been developed, but none have outperformed state-of …
Progress and impact of Latin American natural product databases
A Gómez-García, JL Medina-Franco - Biomolecules, 2022 - mdpi.com
Natural products (NPs) are a rich source of structurally novel molecules, and the chemical
space they encompass is far from being fully explored. Over history, NPs have represented a …
space they encompass is far from being fully explored. Over history, NPs have represented a …
PubChem substance and compound databases
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a public repository for information
on chemical substances and their biological activities, launched in 2004 as a component of …
on chemical substances and their biological activities, launched in 2004 as a component of …
GEOM, energy-annotated molecular conformations for property prediction and molecular generation
S Axelrod, R Gomez-Bombarelli - Scientific Data, 2022 - nature.com
Abstract Machine learning (ML) outperforms traditional approaches in many molecular
design tasks. ML models usually predict molecular properties from a 2D chemical graph or a …
design tasks. ML models usually predict molecular properties from a 2D chemical graph or a …
PubChemQC project: a large-scale first-principles electronic structure database for data-driven chemistry
M Nakata, T Shimazaki - Journal of chemical information and …, 2017 - ACS Publications
Large-scale molecular databases play an essential role in the investigation of various
subjects such as the development of organic materials, in silico drug design, and data …
subjects such as the development of organic materials, in silico drug design, and data …
Exploring chemical information in PubChem
S Kim - Current protocols, 2021 - Wiley Online Library
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a public chemical database that
serves scientific communities as well as the general public. This database collects chemical …
serves scientific communities as well as the general public. This database collects chemical …
Flexibility and binding affinity in protein–ligand, protein–protein and multi-component protein interactions: limitations of current computational approaches
P Tuffery, P Derreumaux - Journal of The Royal Society …, 2012 - royalsocietypublishing.org
The recognition process between a protein and a partner represents a significant theoretical
challenge. In silico structure-based drug design carried out with nothing more than the three …
challenge. In silico structure-based drug design carried out with nothing more than the three …
QMugs, quantum mechanical properties of drug-like molecules
Abstract Machine learning approaches in drug discovery, as well as in other areas of the
chemical sciences, benefit from curated datasets of physical molecular properties. However …
chemical sciences, benefit from curated datasets of physical molecular properties. However …
PubChem chemical structure standardization
Background PubChem is a chemical information repository, consisting of three primary
databases: Substance, Compound, and BioAssay. When individual data contributors submit …
databases: Substance, Compound, and BioAssay. When individual data contributors submit …
PubChem3D: a new resource for scientists
Background PubChem is an open repository for small molecules and their experimental
biological activity. PubChem integrates and provides search, retrieval, visualization …
biological activity. PubChem integrates and provides search, retrieval, visualization …