Mechanisms of bacterial transcription termination: all good things must end

A Ray-Soni, MJ Bellecourt… - Annual review of …, 2016 - annualreviews.org
Transcript termination is essential for accurate gene expression and the removal of RNA
polymerase (RNAP) at the ends of transcription units. In bacteria, two mechanisms are …

Structural basis for intrinsic transcription termination

L You, EO Omollo, C Yu, RA Mooney, J Shi, L Shen… - Nature, 2023 - nature.com
Efficient and accurate termination is required for gene transcription in all living organisms,.
Cellular RNA polymerases in both bacteria and eukaryotes can terminate their transcription …

RNA polymerase pausing and nascent-RNA structure formation are linked through clamp-domain movement

PP Hein, KE Kolb, T Windgassen… - Nature structural & …, 2014 - nature.com
The rates of RNA synthesis and the folding of nascent RNA into biologically active structures
are linked via pausing by RNA polymerase (RNAP). Structures that form within the RNA-exit …

[HTML][HTML] Observation of structural switch in nascent SAM-VI riboswitch during transcription at single-nucleotide and single-molecule resolution

Y Xue, J Li, D Chen, X Zhao, L Hong, Y Liu - Nature Communications, 2023 - nature.com
Growing RNAs fold differently as they are transcribed, which modulates their finally adopted
structures. Riboswitches regulate gene expression by structural change, which are sensitive …

Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator

R Li, Q Zhang, J Li, H Shi - Nucleic acids research, 2016 - academic.oup.com
An experimental system was designed to measure in vivo termination efficiency (TE) of the
Rho-independent terminator and position–function relations were quantified for the …

[HTML][HTML] Structural basis for transcription antitermination at bacterial intrinsic terminator

L You, J Shi, L Shen, L Li, C Fang, C Yu… - Nature …, 2019 - nature.com
Bacteriophages typically hijack the host bacterial transcriptional machinery to regulate their
own gene expression and that of the host bacteria. The structural basis for bacteriophage …

[HTML][HTML] Clusters of hairpins induce intrinsic transcription termination in bacteria

S Gupta, D Pal - Scientific Reports, 2021 - nature.com
Intrinsic transcription termination (ITT) sites are currently identified by locating single and
double-adjacent RNA hairpins downstream of the stop codon. ITTs for a limited number of …

RNA polymerase III subunits C37/53 modulate rU: dA hybrid 3′ end dynamics during transcription termination

S Mishra, RJ Maraia - Nucleic Acids Research, 2019 - academic.oup.com
Abstract RNA polymerase (RNAP) III synthesizes tRNAs and other transcripts, and mutations
to its subunits cause human disorders. The RNAP III subunit-heterodimer C37/53 functions …

Kinetic regulation mechanism of pbuE riboswitch

S Gong, Y Wang, W Zhang - The Journal of Chemical Physics, 2015 - pubs.aip.org
Riboswitches are RNA residue segments located in untranslated regions of messenger
RNAs. These folded segments directly bind ligands through shape complementarity and …

Trigger loop dynamics can explain stimulation of intrinsic termination by bacterial RNA polymerase without terminator hairpin contact

A Ray-Soni, RA Mooney… - Proceedings of the …, 2017 - National Acad Sciences
In bacteria, intrinsic termination signals cause disassembly of the highly stable elongating
transcription complex (EC) over windows of two to three nucleotides after kilobases of RNA …