Comprehensive evaluation of deep and graph learning on drug–drug interactions prediction

X Lin, L Dai, Y Zhou, ZG Yu, W Zhang… - Briefings in …, 2023 - academic.oup.com
Recent advances and achievements of artificial intelligence (AI) as well as deep and graph
learning models have established their usefulness in biomedical applications, especially in …

Comprehensive Review of Drug–Drug Interaction Prediction Based on Machine Learning: Current Status, Challenges, and Opportunities

NN Wang, B Zhu, XL Li, S Liu, JY Shi… - Journal of Chemical …, 2023 - ACS Publications
Detecting drug–drug interactions (DDIs) is an essential step in drug development and drug
administration. Given the shortcomings of current experimental methods, the machine …

Learning size-adaptive molecular substructures for explainable drug–drug interaction prediction by substructure-aware graph neural network

Z Yang, W Zhong, Q Lv, CYC Chen - Chemical science, 2022 - pubs.rsc.org
Drug–drug interactions (DDIs) can trigger unexpected pharmacological effects on the body,
and the causal mechanisms are often unknown. Graph neural networks (GNNs) have been …

Network learning for biomarker discovery

Y Ding, M Fu, P Luo, FX Wu - International Journal of Network Dynamics …, 2023 - sciltp.com
Everything is connected and thus networks are instrumental in not only modeling complex
systems with many components, but also accommodating knowledge about their …

A biomedical knowledge graph-based method for drug–drug interactions prediction through combining local and global features with deep neural networks

ZH Ren, ZH You, CQ Yu, LP Li, YJ Guan… - Briefings in …, 2022 - academic.oup.com
Drug–drug interactions (DDIs) prediction is a challenging task in drug development and
clinical application. Due to the extremely large complete set of all possible DDIs, computer …

Multi-type feature fusion based on graph neural network for drug-drug interaction prediction

C He, Y Liu, H Li, H Zhang, Y Mao, X Qin, L Liu… - BMC …, 2022 - Springer
Abstract Background Drug-Drug interactions (DDIs) are a challenging problem in drug
research. Drug combination therapy is an effective solution to treat diseases, but it can also …

Prediction of drug-drug interaction using an attention-based graph neural network on drug molecular graphs

YH Feng, SW Zhang - Molecules, 2022 - mdpi.com
The treatment of complex diseases by using multiple drugs has become popular. However,
drug-drug interactions (DDI) may give rise to the risk of unanticipated adverse effects and …

[HTML][HTML] Improved prediction of drug-drug interactions using ensemble deep neural networks

TH Vo, NTK Nguyen, NQK Le - Medicine in Drug Discovery, 2023 - Elsevier
Nowadays, combining multiple drugs is the optimal therapy to decelerate the pathologic
process, which contains various underlying adverse effects due to drug-drug interactions …

[HTML][HTML] Drug repositioning in drug discovery of T2DM and repositioning potential of antidiabetic agents

S Zhu, Q Bai, L Li, T Xu - Computational and Structural Biotechnology …, 2022 - Elsevier
Repositioning or repurposing drugs account for a substantial part of entering approval
pipeline drugs, which indicates that drug repositioning has huge market potential and value …

Drug-drug interactions prediction based on deep learning and knowledge graph: A review

H Luo, W Yin, J Wang, G Zhang, W Liang, J Luo, C Yan - Iscience, 2024 - cell.com
Drug-drug interactions can produce unpredictable pharmacological effects and lead to
adverse events that have the potential to cause irreversible organ damage or death …