Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application
In the last decade, the revolution in sequencing technologies has deeply impacted crop
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …
Perspectives for genomic selection applications and research in plants
Genomic selection (GS) has created a lot of excitement and expectations in the animal‐and
plant‐breeding research communities. In this review, we briefly describe how genomic …
plant‐breeding research communities. In this review, we briefly describe how genomic …
[HTML][HTML] Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array
HY Tsai, A Hamilton, AE Tinch, DR Guy, K Gharbi… - BMC genomics, 2015 - Springer
Background The genetic architecture of complex traits in farmed animal populations is of
interest from a scientific and practical perspective. The use of genetic markers to predict the …
interest from a scientific and practical perspective. The use of genetic markers to predict the …
Optimising genomic selection in wheat: effect of marker density, population size and population structure on prediction accuracy
Genomic selection applied to plant breeding enables earlier estimates of a line's
performance and significant reductions in generation interval. Several factors affecting …
performance and significant reductions in generation interval. Several factors affecting …
[HTML][HTML] Genomic prediction of host resistance to sea lice in farmed Atlantic salmon populations
HY Tsai, A Hamilton, AE Tinch, DR Guy… - Genetics Selection …, 2016 - Springer
Background Sea lice have significant negative economic and welfare impacts on marine
Atlantic salmon farming. Since host resistance to sea lice has a substantial genetic …
Atlantic salmon farming. Since host resistance to sea lice has a substantial genetic …
A two‐part strategy for using genomic selection to develop inbred lines
We propose a strategy for implementing genomic selection in plant breeding programs for
developing inbred lines that reorganizes traditional breeding programs into two distinct …
developing inbred lines that reorganizes traditional breeding programs into two distinct …
[HTML][HTML] Integrating crop growth models with whole genome prediction through approximate Bayesian computation
Genomic selection, enabled by whole genome prediction (WGP) methods, is revolutionizing
plant breeding. Existing WGP methods have been shown to deliver accurate predictions in …
plant breeding. Existing WGP methods have been shown to deliver accurate predictions in …
[HTML][HTML] Integrated genomic selection for rapid improvement of crops
An increase in the rate of crop improvement is essential for achieving sustained food
production and other needs of ever-increasing population. Genomic selection (GS) is a …
production and other needs of ever-increasing population. Genomic selection (GS) is a …
[HTML][HTML] Optimal cross selection for long-term genetic gain in two-part programs with rapid recurrent genomic selection
Key message Optimal cross selection increases long-term genetic gain of two-part programs
with rapid recurrent genomic selection. It achieves this by optimising efficiency of converting …
with rapid recurrent genomic selection. It achieves this by optimising efficiency of converting …
Adding genetically distant individuals to training populations reduces genomic prediction accuracy in barley
One of the most important factors affecting genomic prediction accuracy appears to be
training population (TP) composition. The objective of this study was to evaluate the effect of …
training population (TP) composition. The objective of this study was to evaluate the effect of …