Protein phosphatases in the RNAPII transcription cycle: erasers, sculptors, gatekeepers, and potential drug targets
The transcription cycle of RNA polymerase II (RNAPII) is governed at multiple points by
opposing actions of cyclin-dependent kinases (CDKs) and protein phosphatases, in a …
opposing actions of cyclin-dependent kinases (CDKs) and protein phosphatases, in a …
[HTML][HTML] Biogenesis of RNA polymerases in yeast
AI Garrido-Godino, F Gutiérrez-Santiago… - Frontiers in Molecular …, 2021 - frontiersin.org
Eukaryotic RNA polymerases (RNA pols) transcriptional processes have been extensively
investigated, and the structural analysis of eukaryotic RNA pols has been explored …
investigated, and the structural analysis of eukaryotic RNA pols has been explored …
Boosting detection of low-abundance proteins in thermal proteome profiling experiments by addition of an isobaric trigger channel to TMT multiplexes
SA Peck Justice, NA McCracken, JF Victorino… - Analytical …, 2021 - ACS Publications
The study of low-abundance proteins is a challenge to discovery-based proteomics. Mass
spectrometry (MS) applications, such as thermal proteome profiling (TPP), face specific …
spectrometry (MS) applications, such as thermal proteome profiling (TPP), face specific …
[PDF][PDF] RPAP2 regulates a transcription initiation checkpoint by inhibiting assembly of pre-initiation complex
X Wang, Y Qi, Z Wang, L Wang, A Song, B Tao, J Li… - Cell Reports, 2022 - cell.com
Summary RNA polymerase II (Pol II)-mediated transcription in metazoans requires precise
regulation. RNA Pol II-associated protein 2 (RPAP2) was previously identified to transport …
regulation. RNA Pol II-associated protein 2 (RPAP2) was previously identified to transport …
RNA polymerase II phosphorylation and gene looping: new roles for the Rpb4/7 heterodimer in regulating gene expression
O Calvo - Current Genetics, 2020 - Springer
In eukaryotes, cellular RNAs are produced by three nuclear RNA polymerases (RNAPI, II,
and III), which are multisubunit complexes. They share structural and functional features …
and III), which are multisubunit complexes. They share structural and functional features …
[HTML][HTML] The Association of Rpb4 with RNA Polymerase II Depends on CTD Ser5P Phosphatase Rtr1 and Influences mRNA Decay in Saccharomyces cerevisiae
AI Garrido-Godino, A Cuevas-Bermúdez… - International journal of …, 2022 - mdpi.com
Rtr1 is an RNA polymerase II (RNA pol II) CTD-phosphatase that influences gene
expression during the transition from transcription initiation to elongation and during …
expression during the transition from transcription initiation to elongation and during …
RNA Pol II Assembly Affects ncRNA Expression
AI Garrido-Godino, I Gupta, V Pelechano… - International Journal of …, 2023 - mdpi.com
RNA pol II assembly occurs in the cytoplasm before translocation of the enzyme to the
nucleus. Affecting this assembly influences mRNA transcription in the nucleus and mRNA …
nucleus. Affecting this assembly influences mRNA transcription in the nucleus and mRNA …
[HTML][HTML] The chromatin remodeler Ino80 mediates RNAPII pausing site determination
Background Promoter-proximal pausing of RNA polymerase II (RNAPII) is a critical step for
the precise regulation of gene expression. Despite the apparent close relationship between …
the precise regulation of gene expression. Despite the apparent close relationship between …
Rtr1 is required for Rpb1‐Rpb2 assembly of RNAPII and prevents their cytoplasmic clump formation
L Ma, L Wang, M Gao, X Zhang, X Zhao… - The FASEB …, 2022 - Wiley Online Library
Abstract RNA polymerase II (RNAPII) is an essential machinery for catalyzing mRNA
synthesis and controlling cell fate in eukaryotes. Although the structure and function of …
synthesis and controlling cell fate in eukaryotes. Although the structure and function of …
Characterization of BioID tagging systems in budding yeast and exploring the interactome of the Ccr4-Not complex.
J Pfannenstein, M Tyryshkin, ME Gulden, EH Doud… - bioRxiv, 2024 - biorxiv.org
The modified E. coli biotin ligase BirA* was the first developed for proximity labeling of
proteins (BioID). However, it has low activity at temperatures below 37° C, which reduces its …
proteins (BioID). However, it has low activity at temperatures below 37° C, which reduces its …