Multi-omics approaches to disease
High-throughput technologies have revolutionized medical research. The advent of
genotyping arrays enabled large-scale genome-wide association studies and methods for …
genotyping arrays enabled large-scale genome-wide association studies and methods for …
The power and promise of RNA‐seq in ecology and evolution
Reference is regularly made to the power of new genomic sequencing approaches. Using
powerful technology, however, is not the same as having the necessary power to address a …
powerful technology, however, is not the same as having the necessary power to address a …
RNA-Seq perspectives to improve clinical diagnosis
G Marco-Puche, S Lois, J Benítez, JC Trivino - Frontiers in genetics, 2019 - frontiersin.org
In recent years, high-throughput next-generation sequencing technology has allowed a
rapid increase in diagnostic capacity and precision through different bioinformatics …
rapid increase in diagnostic capacity and precision through different bioinformatics …
dupRadar: a Bioconductor package for the assessment of PCR artifacts in RNA-Seq data
Background PCR clonal artefacts originating from NGS library preparation can affect both
genomic as well as RNA-Seq applications when protocols are pushed to their limits. In RNA …
genomic as well as RNA-Seq applications when protocols are pushed to their limits. In RNA …
High expression of glycolytic genes in clinical glioblastoma patients correlates with lower survival
KM Stanke, C Wilson, S Kidambi - Frontiers in Molecular Biosciences, 2021 - frontiersin.org
Glioblastoma (GBM), the most aggressive brain tumor, is associated with a median survival
at diagnosis of 16–20 months and limited treatment options. The key hallmark of GBM is …
at diagnosis of 16–20 months and limited treatment options. The key hallmark of GBM is …
Informatics for RNA sequencing: a web resource for analysis on the cloud
Massively parallel RNA sequencing (RNA-seq) has rapidly become the assay of choice for
interrogating RNA transcript abundance and diversity. This article provides a detailed …
interrogating RNA transcript abundance and diversity. This article provides a detailed …
[HTML][HTML] The most common technologies and tools for functional genome analysis
E Gasperskaja, V Kučinskas - Acta Medica Lituanica, 2017 - ncbi.nlm.nih.gov
Since the sequence of the human genome is complete, the main issue is how to understand
the information written in the DNA sequence. Despite numerous genome-wide studies that …
the information written in the DNA sequence. Despite numerous genome-wide studies that …
Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance
Background RNA-Sequencing analysis methods are rapidly evolving, and the tool choice for
each step of one common workflow, differential expression analysis, which includes read …
each step of one common workflow, differential expression analysis, which includes read …
Toward reliable biomarker signatures in the age of liquid biopsies-how to standardize the small RNA-Seq workflow
D Buschmann, A Haberberger, B Kirchner… - Nucleic Acids …, 2016 - academic.oup.com
Small RNA-Seq has emerged as a powerful tool in transcriptomics, gene expression
profiling and biomarker discovery. Sequencing cell-free nucleic acids, particularly microRNA …
profiling and biomarker discovery. Sequencing cell-free nucleic acids, particularly microRNA …
Activation of MYC, a bona fide client of HSP90, contributes to intrinsic ibrutinib resistance in mantle cell lymphoma
The BTK inhibitor ibrutinib has demonstrated a remarkable therapeutic effect in mantle cell
lymphoma (MCL). However, approximately one-third of patients do not respond to the drug …
lymphoma (MCL). However, approximately one-third of patients do not respond to the drug …