[HTML][HTML] An intronic LINE-1 regulates IFNAR1 expression in human immune cells

CA Buttler, D Ramirez, RD Dowell, EB Chuong - Mobile DNA, 2023 - Springer
Background Despite their origins as selfish parasitic sequences, some transposons in the
human genome have been co-opted to serve as regulatory elements, contributing to the …

[HTML][HTML] CRISPR-Cas–induced IRF3 and MAVS knockouts in a salmonid cell line disrupt PRR signaling and affect viral replication

YA van der Wal, H Nordli, A Akandwanaho… - Frontiers in …, 2023 - frontiersin.org
Background Interferon (IFN) responses are critical in the resolution of viral infections and are
actively targeted by many viruses. They also play a role in inducing protective responses …

[HTML][HTML] A dual sgRNA library design to probe genetic modifiers using genome-wide CRISPRi screens

A Guna, KR Page, JM Replogle, TK Esantsi, ML Wang… - BMC genomics, 2023 - Springer
Mapping genetic interactions is essential for determining gene function and defining novel
biological pathways. We report a simple to use CRISPR interference (CRISPRi) based …

[HTML][HTML] ARID1B controls transcriptional programs of axon projection in an organoid model of the human corpus callosum

C Martins-Costa, A Wiegers, VA Pham, J Sidhaye… - Cell Stem Cell, 2024 - cell.com
Mutations in ARID1B, a member of the mSWI/SNF complex, cause severe
neurodevelopmental phenotypes with elusive mechanisms in humans. The most common …

[HTML][HTML] Comparative Proteomic Analysis of Toxoplasma gondii RH Wild-Type and Four SRS29B (SAG1) Knock-Out Clones Reveals Significant Differences between …

KPA Hänggeli, A Hemphill, N Müller, M Heller… - International journal of …, 2023 - mdpi.com
In T. gondii, as well as in other model organisms, gene knock-out using CRISPR-Cas9 is a
suitable tool to identify the role of specific genes. The general consensus implies that only …

Acyl‐CoA dehydrogenase substrate promiscuity: Challenges and opportunities for development of substrate reduction therapy in disorders of valine and isoleucine …

SM Houten, T Dodatko, W Dwyer… - Journal of Inherited …, 2023 - Wiley Online Library
Toxicity of accumulating substrates is a significant problem in several disorders of valine and
isoleucine degradation notably short‐chain enoyl‐CoA hydratase (ECHS1 or crotonase) …

Characterization, Structure, and Inhibition of the Human Succinyl-CoA: glutarate-CoA Transferase, a Putative Genetic Modifier of Glutaric Aciduria Type 1

R Wu, S Khamrui, T Dodatko, J Leandro… - ACS Chemical …, 2024 - ACS Publications
Glutaric Aciduria Type 1 (GA1) is a serious inborn error of metabolism with no
pharmacological treatments. A novel strategy to treat this disease is to divert the toxic …

Mouse B2 SINE elements function as IFN-inducible enhancers

I Horton, CJ Kelly, A Dziulko, DM Simpson, EB Chuong - elife, 2023 - elifesciences.org
Regulatory networks underlying innate immunity continually face selective pressures to
adapt to new and evolving pathogens. Transposable elements (TEs) can affect immune …

[HTML][HTML] Unleashed Actin Assembly in Capping Protein-Deficient B16-F1 Cells Enables Identification of Multiple Factors Contributing to Filopodium Formation

JI Hein, J Scholz, S Körber, T Kaufmann, J Faix - Cells, 2023 - mdpi.com
Background: Filopodia are dynamic, finger-like actin-filament bundles that overcome
membrane tension by forces generated through actin polymerization at their tips to allow …

ARID1B controls transcriptional programs of axon projection in the human corpus callosum

C Martins-Costa, VA Pham, A Wiegers, J Sidhaye… - BioRxiv, 2023 - biorxiv.org
Mutations in ARID1B, a member of the mSWI/SNF complex, cause severe
neurodevelopmental phenotypes with elusive mechanisms in humans. The most common …