A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction
Human leukocyte antigen class I (HLA-I) molecules are encoded by major histocompatibility
complex (MHC) class I loci in humans. The binding and interaction between HLA-I …
complex (MHC) class I loci in humans. The binding and interaction between HLA-I …
An introduction to epitope prediction methods and software
X Yang, X Yu - Reviews in medical virology, 2009 - Wiley Online Library
In this paper, current prediction methods and algorithms for both T‐and B cell epitopes are
reviewed, and a comprehensive summary of epitope prediction software and databases …
reviewed, and a comprehensive summary of epitope prediction software and databases …
NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and -B Locus Protein of Known Sequence
Background Binding of peptides to Major Histocompatibility Complex (MHC) molecules is
the single most selective step in the recognition of pathogens by the cellular immune system …
the single most selective step in the recognition of pathogens by the cellular immune system …
Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research
Background Initiation and regulation of immune responses in humans involves recognition
of peptides presented by human leukocyte antigen class II (HLA-II) molecules. These …
of peptides presented by human leukocyte antigen class II (HLA-II) molecules. These …
DynaDock: A new molecular dynamics‐based algorithm for protein–peptide docking including receptor flexibility
I Antes - Proteins: Structure, Function, and Bioinformatics, 2010 - Wiley Online Library
Molecular docking programs play an important role in drug development and many well‐
established methods exist. However, there are two situations for which the performance of …
established methods exist. However, there are two situations for which the performance of …
[HTML][HTML] Deimmunization of protein therapeutics–Recent advances in experimental and computational epitope prediction and deletion
Biotherapeutics, and antimicrobial proteins in particular, are of increasing interest for human
medicine. An important challenge in the development of such therapeutics is their potential …
medicine. An important challenge in the development of such therapeutics is their potential …
Fully blind peptide-protein docking with pepATTRACT
Peptide-protein interactions are ubiquitous in the cell and form an important part of the
interactome. Computational docking methods can complement experimental …
interactome. Computational docking methods can complement experimental …
Accurate prediction of DnaK-peptide binding via homology modelling and experimental data
J Van Durme, S Maurer-Stroh, R Gallardo… - PLoS computational …, 2009 - journals.plos.org
Molecular chaperones are essential elements of the protein quality control machinery that
governs translocation and folding of nascent polypeptides, refolding and degradation of …
governs translocation and folding of nascent polypeptides, refolding and degradation of …
Structure-based methods for binding mode and binding affinity prediction for peptide-MHC complexes
Understanding the mechanisms involved in the activation of an immune response is
essential to many fields in human health, including vaccine development and personalized …
essential to many fields in human health, including vaccine development and personalized …
HLA3DB: comprehensive annotation of peptide/HLA complexes enables blind structure prediction of T cell epitopes
The class I proteins of the major histocompatibility complex (MHC-I) display epitopic
peptides derived from endogenous proteins on the cell surface for immune surveillance …
peptides derived from endogenous proteins on the cell surface for immune surveillance …