Predicting HLA class I non-permissive amino acid residues substitutions
TA Binkowski, SR Marino, A Joachimiak - 2012 - journals.plos.org
Prediction of peptide binding to human leukocyte antigen (HLA) molecules is essential to a
wide range of clinical entities from vaccine design to stem cell transplant compatibility. Here …
wide range of clinical entities from vaccine design to stem cell transplant compatibility. Here …
Structural allele-specific patterns adopted by epitopes in the MHC-I cleft and reconstruction of MHC: peptide complexes to cross-reactivity assessment
The immune system is engaged in a constant antigenic surveillance through the Major
Histocompatibility Complex (MHC) class I antigen presentation pathway. This is an efficient …
Histocompatibility Complex (MHC) class I antigen presentation pathway. This is an efficient …
HLA-Arena: A customizable environment for the structural modeling and analysis of peptide-HLA complexes for cancer immunotherapy
DA Antunes, JR Abella, S Hall-Swan… - JCO clinical cancer …, 2020 - ascopubs.org
PURPOSE HLA protein receptors play a key role in cellular immunity. They bind intracellular
peptides and display them for recognition by T-cell lymphocytes. Because T-cell activation is …
peptides and display them for recognition by T-cell lymphocytes. Because T-cell activation is …
Predicting affinity and specificity of antigenic peptide binding to major histocompatibility class I molecules
F Sieker, A May, M Zacharias - Current Protein and Peptide …, 2009 - ingentaconnect.com
Major Histo-Compatibility (MHC) class I molecules are major agents of the mammalian
adaptive immune system. Class I molecules bind short antigenic peptides with a length of 8 …
adaptive immune system. Class I molecules bind short antigenic peptides with a length of 8 …
[HTML][HTML] CrossTope: a curate repository of 3D structures of immunogenic peptide: MHC complexes
The CrossTope is a highly curate repository of three-dimensional structures of peptide:
major histocompatibility complex (MHC) class I complexes (pMHC-I). The complexes hosted …
major histocompatibility complex (MHC) class I complexes (pMHC-I). The complexes hosted …
Modeling peptide–protein interactions
Peptide–protein interactions are prevalent in the living cell and form a key component of the
overall protein–protein interaction network. These interactions are drawing increasing …
overall protein–protein interaction network. These interactions are drawing increasing …
Towards universal structure-based prediction of class II MHC epitopes for diverse allotypes
AJ Bordner - PLoS One, 2010 - journals.plos.org
The binding of peptide fragments of antigens to class II MHC proteins is a crucial step in
initiating a helper T cell immune response. The discovery of these peptide epitopes is …
initiating a helper T cell immune response. The discovery of these peptide epitopes is …
Convergent evolution of neutralizing antibodies to Staphylococcus aureus γ-hemolysin C that recognize an immunodominant primary sequence-dependent B-cell …
DN Hernandez, K Tam, B Shopsin, EE Radke, K Law… - MBio, 2020 - Am Soc Microbiol
Staphylococcus aureus infection is a major public health threat in part due to the spread of
antibiotic resistance and repeated failures to develop a protective vaccine. Infection is …
antibiotic resistance and repeated failures to develop a protective vaccine. Infection is …
Crystal structures of two peptide–HLA-B* 1501 complexes; structural characterization of the HLA-B62 supertype
G Røder, T Blicher, S Justesen… - … Section D: Biological …, 2006 - journals.iucr.org
MHC class I molecules govern human cytotoxic T cell responses. Their specificity
determines which peptides they sample from the intracellular protein environment and then …
determines which peptides they sample from the intracellular protein environment and then …
Molecular approximations between residues 21 and 23 of secretin and its receptor: development of a model for peptide docking with the amino terminus of the secretin …
M Dong, PCH Lam, F Gao, K Hosohata, DI Pinon… - Molecular …, 2007 - ASPET
The structurally unique amino-terminal domain of class II G protein-coupled receptors is
critically important for ligand binding and receptor activation. Understanding the precise role …
critically important for ligand binding and receptor activation. Understanding the precise role …