An interaction-based approach for affinity prediction between antigen peptide and human leukocyte antigen using COMBINE analysis

S Nakamura, R Ohmura, I Nakanishi - Chem-Bio Informatics Journal, 2017 - jstage.jst.go.jp
In peptide vaccine therapy, a peptide with high affinity for human leukocyte antigen (HLA), is
important to stimulate the immune system to kill cancer cells. Several methods to predict …

Structure-based prediction of Major Histocompatibility Complex (MHC) epitopes

AJ Bordner - Immunoproteomics: Methods and Protocols, 2013 - Springer
Because of the enormous diversity of both MHC proteins and peptide epitopes,
computational epitope prediction methods are needed in order to supplement limited …

OnionMHC: a deep learning model for peptide-HLA-A* 02: 01 binding predictions

S Saxena - 2021 - dr.ntu.edu.sg
The peptide binding to Major Histocompatibility Complex (MHC) proteins is an important
step in the antigen-presentation pathway. Thus, predicting the binding potential of peptides …

[PDF][PDF] In silico-based direct evolution of peptides and peptidomimetics in drug discovery

G Fernández-Ballester, A Fernández-Carvajal… - …, 2011 - researchgate.net
Because drug discovery efforts have experienced a pronounced decline in productivity,
novel approaches to the rational design of new drugs are being introduced and developed …

Development of Predictive Model for Helper T Lymphocyte Epitope Binding to HLADRB1* 01: 01

A Hardianto, M Yusuf - Chimica et Natura Acta, 2019 - journals.unpad.ac.id
Epitopes are essential peptides for immune system stimulation, such as governing helper T
lymphocyte (HTL) activation via antigen presentation and recognition. Current predictive …

Understanding the role of electrostatics on protein-protein binding

RC Mitra - 2010 - search.proquest.com
Ionized groups carry net charge and thus play a major role in the electrostatic interactions
between the ligand and receptor. Therefore understanding the role of electrostatics on …

[PDF][PDF] Chimica et Natura Acta

A Hardianto, M Yusuf - core.ac.uk
Epitopes are essential peptides for immune system stimulation, such as governing helper T
lymphocyte (HTL) activation via antigen presentation and recognition. Current predictive …

Rational Design of Viral Protein Structures with Predetermined Immunological Properties

J Lara, Y Khudyakov - Structure-Based Study Of Viral Replication …, 2008 - books.google.com
Viral pathogens often stimulate the infected host to develop an immunologic response to
viral proteins as protection against infection. Researchers have explored this human …

Compositions and methods for regulating activity of inhibitor of DNA binding-2 (ID2) protein and for treating ID protein-related diseases

A Iavarone, A Lasorella - US Patent 11,045,525, 2021 - Google Patents
The present disclosure provides, in one embodiment, a method of treating or preventing an
ID2 protein-related disease in a patient at risk of developing or having such a disease by …

[PDF][PDF] Análise intersticial de complexos pMHC para predição de afinidade de ligação

MV de Freitas - 2017 - lume.ufrgs.br
RESUMO O MHC é uma molécula apresentadora que possui um papel importante tanto na
apresentação de peptídeos próprios como não-próprios, para que todo o sistema imune …