[HTML][HTML] Expanding omics resources for improvement of soybean seed composition traits

J Chaudhary, GB Patil, H Sonah… - Frontiers in Plant …, 2015 - frontiersin.org
Food resources of the modern world are strained due to the increasing population. There is
an urgent need for innovative methods and approaches to augment food production …

Landscape of genomic diversity and trait discovery in soybean

B Valliyodan, D Qiu, G Patil, P Zeng, J Huang, L Dai… - Scientific reports, 2016 - nature.com
Cultivated soybean [Glycine max (L.) Merr.] is a primary source of vegetable oil and protein.
We report a landscape analysis of genome-wide genetic variation and an association study …

Integration of omics approaches to understand oil/protein content during seed development in oilseed crops

M Gupta, PB Bhaskar, S Sriram, PH Wang - Plant cell reports, 2017 - Springer
Oilseed crops, especially soybean (Glycine max) and canola/rapeseed (Brassica napus),
produce seeds that are rich in both proteins and oils and that are major sources of energy …

New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs

S Zhang, R Li, L Zhang, S Chen, M Xie… - Nucleic acids …, 2020 - academic.oup.com
Arabidopsis thaliana transcriptomes have been extensively studied and characterized under
different conditions. However, most of the current 'RNA-sequencing'technologies produce a …

PCSD: a plant chromatin state database

Y Liu, T Tian, K Zhang, Q You, H Yan… - Nucleic Acids …, 2018 - academic.oup.com
Genome-wide maps of chromatin states have become a powerful representation of genome
annotation and regulatory activity. We collected public and in-house plant epigenomic data …

An evolutionary population structure model reveals pleiotropic effects of GmPDAT for traits related to seed size and oil content in soybean

JY Liu, YW Zhang, X Han, JF Zuo… - Journal of …, 2020 - academic.oup.com
Seed oil traits in soybean that are of benefit to human nutrition and health have been
selected for during crop domestication. However, these domesticated traits have significant …

PlantGSAD: a comprehensive gene set annotation database for plant species

X Ma, H Yan, J Yang, Y Liu, Z Li, M Sheng… - Nucleic Acids …, 2022 - academic.oup.com
With the accumulation of massive data sets from high-throughput experiments and the rapid
emergence of new types of omics data, gene sets have become more diverse and essential …

Selection for a zinc-finger protein contributes to seed oil increase during soybean domestication

QT Li, X Lu, QX Song, HW Chen, W Wei, JJ Tao… - Plant …, 2017 - academic.oup.com
Seed oil is a momentous agronomical trait of soybean (Glycine max) targeted by
domestication in breeding. Although multiple oil-related genes have been uncovered …

Co-expression gene network analysis and functional module identification in bamboo growth and development

X Ma, H Zhao, W Xu, Q You, H Yan, Z Gao… - Frontiers in genetics, 2018 - frontiersin.org
Bamboo is one of the fastest-growing non-timber forest plants. Moso bamboo (Phyllostachys
edulis) is the most economically valuable bamboo in Asia, especially in China. With the …

ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium

Q You, W Xu, K Zhang, L Zhang, X Yi… - Nucleic acids …, 2017 - academic.oup.com
Plant genera with both diploid and polyploid species are a common evolutionary
occurrence. Polyploids, especially allopolyploids such as cotton and wheat, are a great …